Class Hierarchy
All Packages
Index
Class Hierarchy
class java.lang.
Object
class pmr.molecule.
AminoAcid
class pmr.euclid.
AngleType
interface java.applet.
AppletContext
interface java.applet.
AppletStub
interface java.applet.
AudioClip
class pmr.simplegraph.
Axis
class java.awt.
BorderLayout
(implements java.awt.
LayoutManager
)
interface java.awt.peer.
ButtonPeer
(extends java.awt.peer.
ComponentPeer
)
class java.lang.
Character
class pmr.molecule.
ChemicalElement
class pmr.util.
Choice2
class pmr.util.
Choice3
interface java.awt.peer.
ChoicePeer
(extends java.awt.peer.
ComponentPeer
)
class java.lang.
Class
interface java.lang.
Cloneable
class pmr.util.
Codecs
class java.awt.
Color
class java.awt.
Component
(implements java.awt.image.
ImageObserver
)
class java.awt.
Button
class java.awt.
Choice
class java.awt.
Container
class java.awt.
Panel
class java.applet.
Applet
class pmr.simplegraph.
SimpleApplet
(implements pmr.simplegraph.
Helpable
)
class pmr.sgml.
SGMLApplet
(implements pmr.simplegraph.
Helpable
)
class pmr.cml.
CMLApplet
class pmr.sgml.
SGMLTree
(implements pmr.simplegraph.
Helpable
)
class pmr.cml.
CMLTree
class pmr.chemime.
ChemTree
class pmr.chemime.
CCDC
class pmr.chemime.
CIF
class pmr.chemime.
FASTA
class pmr.chemime.
G94
class pmr.chemime.
GAMESS
class pmr.chemime.
JCAMP
class pmr.chemime.
MDLMol
class pmr.chemime.
MOPAC
class pmr.chemime.
PDB
class pmr.chemime.
SMILES
class pmr.chemime.
SwissProt
class pmr.chemime.
VAMP
class pmr.cml.
Glossary
class pmr.sgml.
DTDDoc
class pmr.simplegraph.
ButtonBar
class pmr.simplegraph.
ScrollableTopLevel
(implements pmr.simplegraph.
Helpable
)
class pmr.sgml.
BookmarkWindow
class pmr.simplegraph.
MultiScrollableTopLevel
class pmr.simplegraph.
NumericTable
class pmr.simplegraph.
ObjectTable
class pmr.sgml.
SGMLTOC
class pmr.sgml.
GeneralTOC
class java.awt.
Window
class java.awt.
Dialog
class pmr.simplegraph.
InfoDialog
class pmr.simplegraph.
MultiDialog
class java.awt.
Frame
(implements java.awt.
MenuContainer
)
class pmr.simplegraph.
AppletFrame
class pmr.simplegraph.
SimpleFrame
class pmr.chemime.
CMLEditor
class pmr.chemime.
Spectator
class java.awt.
List
class java.awt.
TextComponent
class java.awt.
TextArea
interface java.awt.peer.
ComponentPeer
interface java.awt.peer.
ContainerPeer
(extends java.awt.peer.
ComponentPeer
)
class java.net.
ContentHandler
interface java.net.
ContentHandlerFactory
class pmr.sgml.
DTD
class pmr.sgml.
ANYDTD
(implements pmr.sgml.
DynamicDTD
)
class pmr.cml.
CMLDTD
(implements pmr.sgml.
DynamicDTD
)
class pmr.sgml.
DTDDTD
(implements pmr.sgml.
DynamicDTD
)
class pmr.sgml.
HTMLDTD
(implements pmr.sgml.
DynamicDTD
)
class pmr.cml.
MOLDTD
(implements pmr.sgml.
DynamicDTD
)
class pmr.cml.
TecMLDTD
(implements pmr.sgml.
DynamicDTD
)
class java.util.
Date
interface java.awt.peer.
DialogPeer
(extends java.awt.peer.
WindowPeer
)
class java.util.
Dictionary
class java.util.
Hashtable
(implements java.lang.
Cloneable
)
class pmr.cml.
IndexTable
class pmr.euclid.
Int2RangeHashtable
class java.util.
Properties
class pmr.euclid.
Real2RangeHashtable
class java.awt.
Dimension
interface pmr.simplegraph.
Drawable
class pmr.simplegraph.
DrawableObject
(implements pmr.simplegraph.
Drawable
, pmr.simplegraph.
Helpable
)
class pmr.molecule.
BasicSequence
class pmr.molecule.
ProteinSequence
class pmr.molecule.
MySequence
class pmr.simplegraph.
Circle
class pmr.simplegraph.
DrawableText
class pmr.simplegraph.
DrawableHelp
class pmr.cml.
MolecularObject
class pmr.molecule.
SimpleSMILES
class pmr.simplegraph.
Square
class pmr.molecule.
DynamicAligner
interface pmr.sgml.
DynamicDTD
class pmr.sgml.
ESISStream
class pmr.util.
EndsWithFilter
(implements java.io.
FilenameFilter
)
class pmr.sgml.
EntitySet
interface java.util.
Enumeration
class java.awt.
Event
class java.io.
File
class java.io.
FileDescriptor
interface java.io.
FilenameFilter
class java.awt.
FlowLayout
(implements java.awt.
LayoutManager
)
class java.awt.
Font
class java.awt.
FontMetrics
interface java.awt.peer.
FramePeer
(extends java.awt.peer.
WindowPeer
)
class pmr.cml.
FullAddress
class pmr.sgml.
GI
class pmr.simplegraph.
GIFEncoder
class pmr.simplegraph.
GifImage
class java.awt.
Graphics
interface pmr.simplegraph.
Helpable
class java.awt.
Image
interface java.awt.image.
ImageObserver
class java.net.
InetAddress
class java.io.
InputStream
class java.io.
FileInputStream
class java.io.
FilterInputStream
class java.io.
BufferedInputStream
class java.awt.
Insets
(implements java.lang.
Cloneable
)
class pmr.euclid.
Int
class pmr.euclid.
IntSet
class pmr.sgml.
SGMLNodeIndexSet
class pmr.sgml.
SGMLUserClass
class pmr.simplegraph.
JUMBO
(implements pmr.simplegraph.
Helpable
)
interface java.awt.
LayoutManager
interface java.awt.peer.
ListPeer
(extends java.awt.peer.
ComponentPeer
)
class pmr.chemime.
MIME
class java.lang.
Math
interface java.awt.peer.
MenuBarPeer
(extends java.awt.peer.
MenuComponentPeer
)
class java.awt.
MenuComponent
class java.awt.
MenuBar
(implements java.awt.
MenuContainer
)
class java.awt.
MenuItem
class java.awt.
Menu
(implements java.awt.
MenuContainer
)
interface java.awt.peer.
MenuComponentPeer
interface java.awt.
MenuContainer
interface java.awt.peer.
MenuItemPeer
(extends java.awt.peer.
MenuComponentPeer
)
interface java.awt.peer.
MenuPeer
(extends java.awt.peer.
MenuItemPeer
)
class pmr.util.
NVPair
class java.lang.
Number
class java.lang.
Double
class java.lang.
Float
class java.lang.
Integer
class java.lang.
Long
class java.io.
OutputStream
class java.io.
ByteArrayOutputStream
class java.io.
FileOutputStream
class java.io.
FilterOutputStream
class java.io.
BufferedOutputStream
class java.io.
PrintStream
class pmr.simplegraph.
Paragraph
(implements pmr.simplegraph.
Drawable
)
class java.awt.
Point
class pmr.euclid.
Polar
class java.awt.
Polygon
class java.util.
Random
class pmr.euclid.
Real
class java.awt.
Rectangle
interface java.lang.
Runnable
class java.lang.
Runtime
class pmr.sgml.
SGMLAttlist
class pmr.sgml.
SGMLAttribute
class pmr.sgml.
SGMLNode
class pmr.sgml.
ATTRIBUTENode
class pmr.sgml.
ATTVALNode
class pmr.sgml.
CONTENTNode
class pmr.sgml.
DTDNode
class pmr.sgml.
DrawableSGMLNode
(implements pmr.simplegraph.
Drawable
, pmr.simplegraph.
Helpable
)
class pmr.sgml.
DrawableHTMLNode
class pmr.sgml.
HTML_ADDRESSNode
class pmr.sgml.
HTML_ANode
class pmr.sgml.
HTML_BASENode
class pmr.sgml.
HTML_BRNode
class pmr.sgml.
HTML_BlockNode
class pmr.sgml.
HTML_BodyNode
class pmr.sgml.
HTML_DDNode
class pmr.sgml.
HTML_DLNode
class pmr.sgml.
HTML_DTNode
class pmr.sgml.
HTML_EmptyNode
class pmr.sgml.
H_IMGNode
class pmr.sgml.
HTML_FlowContainerNode
class pmr.sgml.
HTML_FlowNode
class pmr.sgml.
HTML_FontPhraseNode
class pmr.sgml.
HTML_HEADNode
class pmr.sgml.
HTML_HNode
class pmr.sgml.
HTML_HRNode
class pmr.sgml.
HTML_IMGNode
class pmr.sgml.
HTML_LINKNode
class pmr.sgml.
HTML_LINode
class pmr.sgml.
HTML_ListNode
class pmr.sgml.
HTML_METANode
class pmr.sgml.
HTML_PNode
class pmr.sgml.
HTML_TITLENode
class pmr.sgml.
HTML_TextContainerNode
class pmr.sgml.
HTML_TextNode
class pmr.sgml.
PCDATA
class pmr.cml.
DrawableX_Node
class pmr.cml.
ADMINNode
class pmr.cml.
GlossaryAdmin
class pmr.cml.
ATOMSNode
class pmr.cml.
BIBNode
class pmr.cml.
BONDSNode
(implements pmr.cml.
SubAddressable
)
class pmr.cml.
CMLNode
class pmr.cml.
CRYSTNode
class pmr.cml.
DataPrimitive
class pmr.cml.
ARRAYNode
class pmr.cml.
XVARNode
class pmr.cml.
FEATURENode
class pmr.cml.
FIGURENode
class pmr.cml.
FORMULANode
class pmr.cml.
MOLNode
(implements pmr.cml.
SubAddressable
)
class pmr.cml.
PERSONNode
class pmr.cml.
RELATIONNode
class pmr.cml.
SEQUENCENode
(implements pmr.cml.
SubAddressable
)
class pmr.cml.
SYMBOLNode
class pmr.cml.
SYMMETRYNode
class pmr.cml.
TERMENTRYNode
class pmr.cml.
TecMLNode
class pmr.cml.
XADDRNode
class pmr.cml.
XHTMLNode
class pmr.cml.
XLISTNode
(implements pmr.cml.
SubAddressable
)
class pmr.cml.
XNOTATIONNode
class pmr.sgml.
ELEMENTNode
class pmr.sgml.
HTMLNode
class pmr.sgml.
HTMLnonEMPTYNode
class pmr.sgml.
H_ANode
class pmr.sgml.
H_HEADNode
class pmr.sgml.
H_TITLENode
class pmr.sgml.
LISTNode
class pmr.sgml.
SGMLStream
class pmr.simplegraph.
Scaler2D
class java.lang.
SecurityManager
class pmr.molecule.
SequenceAligner
class pmr.simplegraph.
SimpleGraph
class pmr.simplegraph.
SimpleImage
class pmr.simplegraph.
SimpleImageOne
class pmr.simplegraph.
SimpleImageTwo
class pmr.simplegraph.
SimpleText
(implements pmr.simplegraph.
Drawable
)
class pmr.stat.
Stat
class pmr.stat.
DrawableStat
(implements pmr.simplegraph.
Drawable
)
class pmr.stat.
Bivariate
class pmr.stat.
Multivariate
class pmr.stat.
Univariate
class pmr.euclid.
Status
(implements java.lang.
Cloneable
)
class pmr.euclid.
Angle
class pmr.euclid.
Int2
class pmr.euclid.
Int2Range
class pmr.euclid.
IntArray
class pmr.euclid.
IntMatrix
class pmr.euclid.
IntSquareMatrix
class pmr.euclid.
IntRange
class pmr.euclid.
Line3
class pmr.euclid.
ObjectArray
class pmr.euclid.
Plane3
class pmr.euclid.
Point3
class pmr.euclid.
Real2
class pmr.euclid.
Complex
class pmr.euclid.
Vector2
class pmr.euclid.
Real2Range
class pmr.euclid.
Real3Range
class pmr.euclid.
RealArray
class pmr.euclid.
RealMatrix
class pmr.euclid.
RealSquareMatrix
class pmr.molecule.
AminoAcidMatrix
class pmr.euclid.
Transform2
class pmr.euclid.
Transform3
class pmr.euclid.
RealRange
class pmr.euclid.
Vector3
class pmr.molecule.
Stoichiometry
class java.lang.
String
class java.lang.
StringBuffer
class pmr.util.
StringList
class pmr.euclid.
StringSet
class java.util.
StringTokenizer
(implements java.util.
Enumeration
)
interface pmr.cml.
SubAddressable
class java.lang.
System
class .
TestAlign
interface java.awt.peer.
TextAreaPeer
(extends java.awt.peer.
TextComponentPeer
)
interface java.awt.peer.
TextComponentPeer
(extends java.awt.peer.
ComponentPeer
)
class java.lang.
Thread
(implements java.lang.
Runnable
)
class java.lang.
ThreadGroup
class java.lang.
Throwable
class java.lang.
Error
class java.awt.
AWTError
class java.lang.
LinkageError
class java.lang.
IncompatibleClassChangeError
class java.lang.
IllegalAccessError
class java.lang.
NoSuchMethodError
class java.lang.
UnsatisfiedLinkError
class java.lang.
ThreadDeath
class java.lang.
VirtualMachineError
class java.lang.
InternalError
class java.lang.
Exception
class java.awt.
AWTException
class pmr.euclid.
ArrayTooSmallException
class pmr.sgml.
BadAttributeException
class pmr.util.
BadFileException
class pmr.cml.
BadCMLFileException
class pmr.sgml.
BadESISFileException
class pmr.chemime.
BadPDBFileException
class pmr.sgml.
BadSGMLFileException
class pmr.chemime.
BadCCDCFileException
class pmr.chemime.
BadJCAMPFileException
class pmr.chemime.
BadMolFileException
class pmr.chemime.
BadSwissProtFileException
class pmr.chemime.
BadSMILESException
class pmr.cml.
BadTecMLAddressException
class pmr.cml.
BadX_NodeException
class pmr.cml.
BadRELATIONNodeException
class java.lang.
ClassNotFoundException
class java.lang.
CloneNotSupportedException
class pmr.stat.
CoincidentDataException
class pmr.sgml.
DTDViolationException
class pmr.sgml.
DifferentSGMLTreesException
class pmr.cml.
DuplicateATOMSException
class pmr.cml.
DuplicateBONDSException
class pmr.sgml.
DuplicateGIException
class pmr.molecule.
DuplicateUnitException
class pmr.simplegraph.
GifImageException
class java.io.
IOException
class java.io.
FileNotFoundException
class java.io.
InterruptedIOException
class java.net.
MalformedURLException
class java.net.
UnknownHostException
class java.net.
UnknownServiceException
class pmr.euclid.
IllConditionedMatrixException
class pmr.euclid.
NonPositiveDefiniteMatrixException
class pmr.euclid.
SingularMatrixException
class java.lang.
IllegalAccessException
class pmr.molecule.
IncompatibleUnitException
class pmr.cml.
InconsistentAtomCountException
class pmr.cml.
InconsistentBondCountException
class java.lang.
InstantiationException
class java.lang.
InterruptedException
class pmr.euclid.
InvalidArgumentException
class pmr.simplegraph.
InvalidArgumentsException
class pmr.sgml.
InvalidNodeException
class pmr.euclid.
MatrixShapeException
class pmr.euclid.
NonRectangularMatrixException
class pmr.euclid.
NonSquareMatrixException
class pmr.euclid.
UnconformableMatricesException
class pmr.cml.
NoAtomsException
class java.lang.
RuntimeException
class java.lang.
ArithmeticException
class java.lang.
IllegalArgumentException
class java.lang.
IllegalThreadStateException
class java.lang.
NumberFormatException
class java.lang.
IndexOutOfBoundsException
class java.lang.
ArrayIndexOutOfBoundsException
class pmr.euclid.
BadSubscriptException
class java.lang.
StringIndexOutOfBoundsException
class java.util.
NoSuchElementException
class java.lang.
NullPointerException
class java.lang.
SecurityException
class pmr.euclid.
StringSetException
class pmr.sgml.
TreeViolationException
class pmr.euclid.
UnequalLengthArraysException
class pmr.euclid.
UnimplementedException
class pmr.euclid.
UninitialisedException
class pmr.euclid.
ZeroLengthVectorException
class java.awt.
Toolkit
class pmr.sgml.
TreeContainer
class pmr.sgml.
Clipboard
class pmr.sgml.
FileTransporter
class pmr.cml.
CMLTransporter
class pmr.chemime.
SpectatorContainer
class pmr.sgml.
TrashCan
class pmr.sgml.
TreeTransporter
class java.net.
URL
class java.net.
URLConnection
class java.net.
URLStreamHandler
interface java.net.
URLStreamHandlerFactory
class pmr.molecule.
Unit
class pmr.molecule.
NonSIUnit
class pmr.molecule.
SIUnit
class pmr.molecule.
UnitDimension
class pmr.util.
Util
class java.util.
Vector
(implements java.lang.
Cloneable
)
class pmr.euclid.
EuclidVector
class pmr.euclid.
Int2Vector
class pmr.euclid.
Point3Vector
class pmr.euclid.
Real2Vector
class pmr.euclid.
HashedVector
class pmr.euclid.
IntRangeVector
class pmr.euclid.
RealRangeVector
class pmr.util.
StringCounter
interface java.awt.peer.
WindowPeer
(extends java.awt.peer.
ContainerPeer
)
class pmr.cml.
XMatrix