Class pmr.chemime.FASTA
All Packages Class Hierarchy This Package Previous Next Index
Class pmr.chemime.FASTA
java.lang.Object
|
+----java.awt.Component
|
+----java.awt.Container
|
+----java.awt.Panel
|
+----java.applet.Applet
|
+----pmr.simplegraph.SimpleApplet
|
+----pmr.sgml.SGMLApplet
|
+----pmr.sgml.SGMLTree
|
+----pmr.cml.CMLTree
|
+----pmr.chemime.ChemTree
|
+----pmr.chemime.FASTA
- public class FASTA
- extends ChemTree
-
FASTA(String, StringList)
- create a CMLTree from a FASTA file
-
process()
- the standard SGMLNode 'process' routine
-
showHelp()
- display help
FASTA
public FASTA(String filename,
StringList lines) throws BadFileException
- create a CMLTree from a FASTA file
- Parameters:
- filename - name of file to read from (or title if lines != null)
- lines - if lines != null, use this as file content instead of filename
- Throws: BadFileException
- missing or corrupt FASTA file
showHelp
public void showHelp()
- display help
- Overrides:
- showHelp in class ChemTree
process
public void process() throws BadFileException
- the standard SGMLNode 'process' routine
- Throws: BadFileException
- corrupt FASTA file
All Packages Class Hierarchy This Package Previous Next Index