Class pmr.molecule.BasicSequence 
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Class pmr.molecule.BasicSequence 

java.lang.Object
   |
   +----pmr.simplegraph.DrawableObject
           |
           +----pmr.molecule.BasicSequence
public class BasicSequence
extends DrawableObject
a simple Sequence class from which Protein and NucleicAcid sequences are derived
Author:
(C) P.Murray-Rust, 1996

Constructor Index

o BasicSequence()
o BasicSequence(String)
create in one-letter form

Method Index

o display(Graphics)
simple output of sequence - normally overwritten
o getProperty(String)
not yet developed fully
o getResidueCount()
the length
o getSequence()
get the sequence string
o main(String[])
test routine
o process()
complex objects may require processing; override this

Constructors

o BasicSequence 
  public BasicSequence()
o BasicSequence 
  public BasicSequence(String s)
create in one-letter form

Methods

o getSequence 
  public String getSequence()
get the sequence string
o getResidueCount 
  public int getResidueCount()
the length
o process 
  public void process()
complex objects may require processing; override this
Overrides:
process in class DrawableObject
o display 
  public void display(Graphics g)
simple output of sequence - normally overwritten
Overrides:
display in class DrawableObject
o getProperty 
  public RealArray getProperty(String propertyName)
not yet developed fully
o main 
  public static void main(String args[])
test routine 
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