Class pmr.cml.BONDSNode 
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Class pmr.cml.BONDSNode 

java.lang.Object
   |
   +----pmr.sgml.SGMLNode
           |
           +----pmr.sgml.DrawableSGMLNode
                   |
                   +----pmr.cml.DrawableX_Node
                           |
                           +----pmr.cml.BONDSNode
public class BONDSNode
extends DrawableX_Node
implements SubAddressable
BONDS holds arrays of bond information - for all bonds

Bonds are not drawable by themselves, but they are SubAddressable (i.e. any bond can be extracted by another routine (e.g. MOLNode))

Variable Index

o AROMATIC
bond orders normalised (to some extent) - values are irrelevant

Constructor Index

o BONDSNode(String, SGMLTree)
normal constructor

Method Index

o addSubAddress(IntRange)
o addSubAddresses(IntRangeVector)
o clearSubAddresses()
o debug()
for debug
o display()
Kicks off a ScrollableTopLevel which contains the object.
o getBondCount()
o getHighlightedBonds()
o getSubAddresses()
o highlightSubAddresses(boolean)
o mayContain(SGMLNode)
can this node contain others.
o process()
complex objects may require processing; override this.
o showHelp()
display Help (includes MOL and ATOMS )

Variables

o AROMATIC 
  public final static int AROMATIC
bond orders normalised (to some extent) - values are irrelevant

Constructors

o BONDSNode 
  public BONDSNode(String giName,
                   SGMLTree tree)
normal constructor

Methods

o showHelp 
  public void showHelp()
display Help (includes MOL and ATOMS )
Overrides:
showHelp in class DrawableX_Node
o getBondCount 
  public int getBondCount()
o mayContain 
  public boolean mayContain(SGMLNode n)
can this node contain others.
Overrides:
mayContain in class DrawableX_Node
o process 
  public void process()
complex objects may require processing; override this.
Overrides:
process in class DrawableSGMLNode
o clearSubAddresses 
  public void clearSubAddresses()
o addSubAddress 
  public void addSubAddress(IntRange ir)
o addSubAddresses 
  public void addSubAddresses(IntRangeVector irv)
o getSubAddresses 
  public IntRangeVector getSubAddresses()
o highlightSubAddresses 
  public void highlightSubAddresses(boolean onOff)
o getHighlightedBonds 
  public IntSet getHighlightedBonds()
o display 
  public void display()
Kicks off a ScrollableTopLevel which contains the object.
Overrides:
display in class DrawableSGMLNode
o debug 
  public void debug()
for debug
Overrides:
debug in class DrawableX_Node 
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