Archive for the ‘Interesting chemistry’ Category
Saturday, January 6th, 2018
The title here is from an article on metalenses[1] which caught my eye.
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References
- M. Khorasaninejad, W.T. Chen, A.Y. Zhu, J. Oh, R.C. Devlin, D. Rousso, and F. Capasso, "Multispectral Chiral Imaging with a Metalens", Nano Letters, vol. 16, pp. 4595-4600, 2016. https://doi.org/10.1021/acs.nanolett.6b01897
Tags:Biochemistry, Biology, Chemistry, Chirality, Circular dichroism, Nature, Pharmacology, Polarization, spectroscopy, Stereochemistry, Ultraviolet, Vibrational circular dichroism
Posted in Interesting chemistry | No Comments »
Saturday, December 23rd, 2017
In the previous post, I referred to a recently published review on hypervalency[1] which introduced a very simple way (the valence electron equivalent γ) of quantifying the effect. Diazomethane was cited as one example of a small molecule exhibiting hypervalency (on nitrogen) by this measure. Here I explore the effect of substituting diazomethane with cyano and nitro groups.‡
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References
- M.C. Durrant, "A quantitative definition of hypervalency", Chemical Science, vol. 6, pp. 6614-6623, 2015. https://doi.org/10.1039/c5sc02076j
Tags:candidate for hypervalent carbon, chemical bonding, Hypervalent molecule, Molecular geometry
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Saturday, December 2nd, 2017
For around 16 years, Floyd Romesberg’s group has been exploring un-natural alternatives (UBPs) to the Watson-Crick base pairs (C-G and A-T) that form part of the genetic code in DNA. Recently they have had remarkable success with one such base pair, called X and Y (for the press) and dNaMTP and d5SICSTP (in scholarly articles).[1],[2] This extends the genetic coding from the standard 20 amino acids to the possibility of up to 172 amino acids. Already, organisms engineered to contain X-Y pairs in their DNA have been shown to express entirely new (and un-natural) proteins.
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References
- A.W. Feldman, M.P. Ledbetter, Y. Zhang, and F.E. Romesberg, "Reply to Hettinger: Hydrophobic unnatural base pairs and the expansion of the genetic alphabet", Proceedings of the National Academy of Sciences, vol. 114, 2017. https://doi.org/10.1073/pnas.1708259114
- D.A. Malyshev, K. Dhami, H.T. Quach, T. Lavergne, P. Ordoukhanian, A. Torkamani, and F.E. Romesberg, "Efficient and sequence-independent replication of DNA containing a third base pair establishes a functional six-letter genetic alphabet", Proceedings of the National Academy of Sciences, vol. 109, pp. 12005-12010, 2012. https://doi.org/10.1073/pnas.1205176109
Tags:Base pair, Biology, DNA, Floyd Romesberg, Gene, genetic code, Genetics, Molecular biology, Molecular genetics, Nucleic acids, Nucleotide, Synthetic genomics
Posted in Interesting chemistry | 3 Comments »
Saturday, September 16th, 2017
Early in 2011, I wrote about how the diatomic molecule Be2 might be persuaded to improve upon its normal unbound state (bond order ~zero) by a double electronic excitation to a strongly bound species. I yesterday updated this post with further suggestions and one of these inspired this follow-up.
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Tags:Be-Be double bond, Be-Be triple bond, Chemical bond, Chemistry, Cs-Cs double bond, Diatomic molecule, free energy, General chemistry, K-K double bond, Li-Li double bond, Molecular geometry, Oxygen, Province/State: Be2, Quantum chemistry, Rb-Rb double bond, Stereochemistry
Posted in Interesting chemistry | 3 Comments »
Wednesday, September 6th, 2017
Tags:bond, Chemical bond, chemical bond zoo, City: Aachen, Concepts, Dialectic, Fuzzy concept, Non-classical logic, Psychometrics, triplet excitation energy
Posted in Bond slam, Interesting chemistry | No Comments »
Thursday, August 31st, 2017
Conferences can be intense, and this one is no exception. After five days, saturation is in danger of setting in. But before it does, I include two more (very) brief things I have learnt.
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Tags:gas phase, journalist, Magnetism, Pavel Hobza, Saturation, Semiconductors - NEC, synthetic chemist, ultrasound
Posted in Interesting chemistry, WATOC reports | 4 Comments »
Tuesday, August 29th, 2017
Another selection (based on my interests, I have to repeat) from WATOC 2017 in Munich.
- Odile Eisenstein gave a talk about predicted 13C chemical shifts in transition metal (and often transient) complexes, with the focus on metallacyclobutanes. These calculations include full spin-orbit/relativistic corrections, essential when the carbon is attached to an even slightly relativistic element. She noted that the 13C shifts of the carbons attached to the metal fall into two camps, those with δ ~+80 ppm and those with values around -8 ppm. These clusters are associated with quite different reactivities, and also seem to cluster according to the planarity or non-planarity of the 4-membered ring. There followed some very nice orbital explanations which I cannot reproduce here because my note taking was incomplete, including discussion of the anisotropy of the solid state spectra. A fascinating story, which I add to here in a minor aspect. Here is a plot of the geometries of the 52 metallacyclobutanes found in the Cambridge structure database. The 4-ring can be twisted by up to 60° around either of the C-C bonds in the ring, and rather less about the M-C bonds. There is a clear cluster (red spot) for entirely flat rings, and perhaps another at around 20° for bent ones, but of interest is that it does form something of a continuum. What is needed is to correlate these geometries with the observed 13C chemical shifts to see if the two sets of clusters match. I include this here because in part such a search can be done in “real-time” whilst the speaker is presenting, and can then be offered as part of the discussion afterwards. It did not happen here because I was chairing the meeting, and hence concentrating entirely on proceedings!
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Tags:chemical shifts, Chemistry, City: Munich, Jan Jenson, metal fall, Munich, Odile Eisenstein, Quotation, speaker, Stefan Grimme, Transition metal, Walter Thiel, World Association of Theoretical and cOmputational Chemists
Posted in Interesting chemistry, WATOC reports | 6 Comments »
Tuesday, August 29th, 2017
The triennial conference is this year located in Munich. With 1500 participants and six parallel sessions, this report can give only a flavour of proceedings.
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Tags:bond dissociation energy, City: Aachen, City: Munich, Dieter Cremer, Edward Valeev, energy, Flavour, Jeremy Harvey, Ken Houk, Leo Radom, Peter Scheiner, Physics, Proceedings, Quark matter, Standard Model, Yitzhak Apeloig
Posted in Interesting chemistry, WATOC reports | No Comments »
Saturday, August 12th, 2017
At the moment, the bond slam is something of a home from home for this blog and since much of my activity is happening there rather than here, I thought I might give you pointers to some of the topics, which are evolving, so to speak, before our very eyes.
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