October 17th, 2012
Every once in a while, one encounters a molecule which instantly makes an interesting point. Thus Ruthenium is ten electrons short of completing an 18-electron shell, and it can form a complex with benzene on one face and a ligand known as trimethylenemethane on the other[1].
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References
- G.E. Herberich, and T.P. Spaniol, "Trimethylenemethane complexes of ruthenium via the trimethylenemethane dianion", Journal of the Chemical Society, Chemical Communications, pp. 1457, 1991. https://doi.org/10.1039/c39910001457
Tags: Iron complex, metal, Postscript
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October 14th, 2012
I occasionally delve into the past I try to understand how we got to our present understanding of chemistry. Thus curly arrow mechanistic notation can be traced back to around 1924, with style that bifurcated into two common types used nowadays (on which I have commented and about which further historical light at the end of this post). Here I try to combine these themes with some analysis of wavefunctions for a particularly troublesome reaction to represent, the dibromination of an alkene, which I represented in the previous post as shown below.
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Tags: Alan Dronsfield, donor-acceptor interaction energy, Gould, Reaction Mechanism, Tutorial material
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October 14th, 2012
There is often a disconnect between how a text-book (schematically) represents a reaction and a more quantitive “reality” revealed by quantum mechanics. Is the bromination of ethene to give 1,2-dibromoethane one such example?
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Tags: energy, fairly simple model for the reaction between bromine and ethene, ionic systems, kcal/mol MORE stable, lowest energy pathway, Tutorial material
Posted in Interesting chemistry | 5 Comments »
October 8th, 2012
Metathesis reactions are a series of catalysed transformations which transpose the atoms in alkenes or alkynes. Alkyne metathesis is closely related to the same reaction for alkenes, and one catalyst that is specific to alkynes was introduced by Schrock (who with Grubbs won the Nobel prize for these discoveries) and is based on tungsten (M=W(OR)3).
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Tags: Reaction Mechanism, X-ray
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October 1st, 2012
Alkene metathesis is part of a new generation of synthetic reaction in which a double C=C bond is formed from appropriate reactants where no bond initially exists (another example is the Wittig reaction), with the involvement† of a 4-membered-ring metallacyclobutane ring 1 (again, very similar to the Wittig). I thought it might make a good addition to my collection of reaction mechanisms and so as the first step I set about locating the transition state (TS or TS’) for the reaction, using in this case a model for Grubbs’ catalyst. I have located a fair few transition states in my time, and was frankly not expecting a surprise. This is the story that showed otherwise …
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Tags: free ligand site, metal, metal coordination, Reaction Mechanism
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September 25th, 2012
This is the follow-up to the previous post exploring a typical nucleophilic addition-elimination reaction. Here is the elimination step, which as before requires proton transfers. We again adopt a cyclic mechanism to try to avoid the build up of charge separation during those proton movements.
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Tags: Reaction Mechanism, Tutorial material
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September 23rd, 2012
The mechanism of forming an oxime from nucleophilic addition of a hydroxylamine to a ketone is taught early on in most courses of organic chemistry. Here I subject the first step of this reaction to form a tetrahedral intermediate to quantum mechanical scrutiny.
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Tags: animation, energy difference, free energy, nucleophilic attack, Reaction Mechanism, text-book author, Tutorial material
Posted in Interesting chemistry, reaction mechanism | 6 Comments »
September 21st, 2012
Semibullvalene is a molecule which undergoes a facile [3,3] sigmatropic shift. So facile that it appears this equilibrium can be frozen out at the transition state if suitable substituents are used. This is a six-electron process, which leads to one of those homologous questions; what happens with ten electrons?
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Tags: aromatic systems, Clar, pericyclic, Reaction Mechanism
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September 19th, 2012
The four-electron thermal cycloaddition (in reverse a cheletropic elimination) of dichlorocarbene to ethene is a classic example of a forbidden pericyclic process taking a roundabout route to avoid directly violating the Woodward-Hoffmann rules. However, a thermal six-electron process normally does take the direct route, as in for example the Diels-Alder cycloaddition as Houk and co have recently showed using molecular dynamics[1]. So can one contrive a six-electron cycloaddition involving dichlorocarbene?
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References
- K. Black, P. Liu, L. Xu, C. Doubleday, and K.N. Houk, "Dynamics, transition states, and timing of bond formation in Diels–Alder reactions", Proceedings of the National Academy of Sciences, vol. 109, pp. 12860-12865, 2012. https://doi.org/10.1073/pnas.1209316109
Tags: asynchronous, Houk and co, pericyclic, Reaction Mechanism
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