Class  Tree  Deprecated  Index  Help 
 PREV CLASS   NEXT CLASS FRAMES    NO FRAMES
SUMMARY:  INNER | FIELD | CONSTR | METHOD DETAIL:  FIELD | CONSTR | METHOD

org.xmlcml.cml
Class BondArrayImpl

java.lang.Object
  |
  +--org.apache.xerces.dom.NodeImpl
        |
        +--org.apache.xerces.dom.ChildNode
              |
              +--org.apache.xerces.dom.ChildAndParentNode
                    |
                    +--org.apache.xerces.dom.ElementImpl
                          |
                          +--uk.co.demon.ursus.dom.AbstractElementImpl
                                |
                                +--uk.co.demon.ursus.dom.PMRElementImpl
                                      |
                                      +--org.xmlcml.cml.CMLBaseImpl
                                            |
                                            +--org.xmlcml.cml.AbstractBuiltinContainerImpl
                                                  |
                                                  +--org.xmlcml.cml.AbstractBondImpl
                                                        |
                                                        +--org.xmlcml.cml.BondArrayImpl
public class BondArrayImpl
extends AbstractBondImpl
implements BondArray

See Also:
Serialized Form

Field Summary
protected  FloatArray[] builtinFloatArrays
           
protected  IntegerArray[] builtinIntegerArrays
           
protected  StringArray[] builtinStringArrays
           
protected  java.util.Hashtable nonBuiltinTable
           
 
Fields inherited from class org.xmlcml.cml.AbstractBondImpl
atomRefVector
 
Fields inherited from class org.xmlcml.cml.AbstractBuiltinContainerImpl
builtinValues, nonBuiltinTable
 
Fields inherited from class org.xmlcml.cml.CMLBaseImpl
conventionName, conventionTable, dictRef, id, title, validity
 
Fields inherited from class uk.co.demon.ursus.dom.PMRElementImpl
CLASSNAME, processFlag
 
Fields inherited from class uk.co.demon.ursus.dom.AbstractElementImpl
CLASSNAME
 
Fields inherited from class org.apache.xerces.dom.ElementImpl
attributes, name
 
Fields inherited from class org.apache.xerces.dom.ChildAndParentNode
changes, firstChild, nodeListIndex, nodeListLength, nodeListNode, ownerDocument
 
Fields inherited from class org.apache.xerces.dom.ChildNode
nextSibling, previousSibling
 
Fields inherited from class org.apache.xerces.dom.NodeImpl
ELEMENT_DEFINITION_NODE, FIRSTCHILD, flags, IGNORABLEWS, MUTATION_AGGREGATE, MUTATION_ALL, MUTATION_LOCAL, MUTATION_NONE, MUTATIONEVENTS, OWNED, ownerNode, READONLY, SETVALUE, SPECIFIED, SYNCCHILDREN, SYNCDATA
 
Fields inherited from interface org.xmlcml.cml.AbstractBond
AROMATIC, ATOMREF, ATOMREFS, BOND_BUILTIN_COUNT, BOND_FLOATVAL_COUNT, BOND_FLOATVAL_END, BOND_FLOATVAL_START, BOND_INTEGERVAL_COUNT, BOND_INTEGERVAL_END, BOND_INTEGERVAL_START, BOND_STRINGVAL_COUNT, BOND_STRINGVAL_END, BOND_STRINGVAL_START, bondOrders, bondTypeStrings, DECREASE, DEFAULTXY2LENGTH, DEFAULTXYZ3LENGTH, DELETE, DOUBLE, HATCH, INCREASE, LENGTH, NOSTEREO, ORDER, OVERRUN, SINGLE, STEREO, TRIPLE, WEDGE, ZERO
 
Fields inherited from interface org.xmlcml.cml.AbstractBuiltinContainer
NONUNIQUE, UNIQUE
 
Fields inherited from interface org.xmlcml.cml.CMLBase
ANGLE, ATOM, ATOMARRAY, BOND, BONDARRAY, BUILTIN, CML, CRYSTAL, ELECTRON, ELEMENT_COUNT, ELEMENT_NAMES, EXECUTE, FEATURE, FLOAT, FLOAT_TYPE, FLOATARRAY, FLOATMATRIX, FORMULA, INTEGER, INTEGER_TYPE, INTEGERARRAY, LINK, LIST, MOLECULE, PACKAGE_NAME, REACTION, SEQUENCE, STRING, STRING_TYPE, STRINGARRAY, TORSION, UNK, UNK_ELEM, UNKNOWN
 
Fields inherited from interface uk.co.demon.ursus.dom.PMRElement
CLASSNAME, LOCAL, QUALIFIED, UNIVERSAL
 
Fields inherited from interface org.xmlcml.cml.HasTitle
TITLE
 
Fields inherited from interface org.xmlcml.cml.HasDictRef
DICTREF
 
Fields inherited from interface org.xmlcml.cml.HasId
ID
 
Fields inherited from interface org.xmlcml.cml.HasConvention
CONVENTION
 
Fields inherited from interface uk.co.demon.ursus.dom.PMRNode
ATTRIBUTES, CONTENT, ELEMENTNAME, IDLIST, NESTED, NESTEDATTS, PACKAGENAME, PRETTY, SPLITFILES, STYLE, TAGGED, UNTAGGED, WHITESPACE, XMLCONTENT
 
Fields inherited from interface org.w3c.dom.Node
ATTRIBUTE_NODE, CDATA_SECTION_NODE, COMMENT_NODE, DOCUMENT_FRAGMENT_NODE, DOCUMENT_NODE, DOCUMENT_TYPE_NODE, ELEMENT_NODE, ENTITY_NODE, ENTITY_REFERENCE_NODE, NOTATION_NODE, PROCESSING_INSTRUCTION_NODE, TEXT_NODE
 
Fields inherited from interface org.w3c.dom.Node
ATTRIBUTE_NODE, CDATA_SECTION_NODE, COMMENT_NODE, DOCUMENT_FRAGMENT_NODE, DOCUMENT_NODE, DOCUMENT_TYPE_NODE, ELEMENT_NODE, ENTITY_NODE, ENTITY_REFERENCE_NODE, NOTATION_NODE, PROCESSING_INSTRUCTION_NODE, TEXT_NODE
 
Constructor Summary
BondArrayImpl()
           
BondArrayImpl(org.w3c.dom.Document document)
          new BondArray in context
BondArrayImpl(org.w3c.dom.Element element)
           
 
Method Summary
 void add(Bond bond)
          when an Bond is added then it is split over the various StringArrays
 AbstractBuiltinContainer createArrayElement(org.w3c.dom.Document document)
           
 void delete(Bond bond)
           
 void deleteNonBuiltinArray(java.lang.String name)
           
 Bond elementAt(int index)
          when an Bond is extracted then it is combined from the various StringArrays
 StringArray getBuiltinArray(int builtinId)
          this is rather trick since BondArray is subclasses from Bond and StringArray from StringVal we can extract the array object as scalars and simply cast them
 StringArray getNonBuiltinArray(java.lang.String name)
           
 void processDOM()
          carries out class-specific processing for subclasses of PMRElement.
 boolean processImmediately()
          do not process on creation
 void setBuiltinArray(int builtinId, StringArray array)
           
 void setNonBuiltinArray(java.lang.String name, StringArray array)
           
 int size()
           
 void updateDOM()
           
 
Methods inherited from class org.xmlcml.cml.AbstractBondImpl
addAtomRef, deleteAtomRef, getAtomRef, getAtomRefVector, getBuiltinCount, getBuiltinFloatValCount, getBuiltinFloatValNames, getBuiltinIntegerValCount, getBuiltinIntegerValNames, getBuiltinNames, getBuiltinStringValCount, getBuiltinStringValNames, getValidity, showBuiltinNames
 
Methods inherited from class org.xmlcml.cml.AbstractBuiltinContainerImpl
addBuiltinChildWithFloatValue, addBuiltinChildWithIntegerValue, addBuiltinChildWithStringValue, checkBuiltins, deleteNonBuiltinVal, getBuiltinChildElements, getBuiltinChildFloatValue, getBuiltinChildIntegerValue, getBuiltinChildStringValue, getBuiltinVal, getNonBuiltinVal, setBuiltinVal, setNonBuiltinVal
 
Methods inherited from class org.xmlcml.cml.CMLBaseImpl
addValidity, convertToSubclass, debug, getConventionName, getDictRef, getId, getSubClassedElement, getTitle, help, isValid, main, setConventionName, setDictRef, setId, setTitle, showElementNames, test1, updateDOMHasConvention, updateDOMHasConvention, updateDOMHasCount, updateDOMHasDictRef, updateDOMHasDictRef, updateDOMHasId, updateDOMHasId, updateDOMHasTitle, updateDOMHasTitle, updateDOMHasUnits
 
Methods inherited from class uk.co.demon.ursus.dom.PMRElementImpl
appendTo, initialise, processDescendants, setProcessFlag
 
Methods inherited from class uk.co.demon.ursus.dom.AbstractElementImpl
setTagName
 
Methods inherited from class org.apache.xerces.dom.ElementImpl
cloneNode, getAttribute, getAttributeNode, getAttributeNodeNS, getAttributeNS, getAttributes, getElementsByTagName, getElementsByTagNameNS, getNodeName, getNodeType, getTagName, hasAttribute, hasAttributeNS, normalize, removeAttribute, removeAttributeNode, removeAttributeNS, setAttribute, setAttributeNode, setAttributeNodeNS, setAttributeNS, setReadOnly, setupDefaultAttributes, synchronizeData
 
Methods inherited from class org.apache.xerces.dom.ChildAndParentNode
changed, changes, getChildNodes, getFirstChild, getLastChild, getLength, getOwnerDocument, hasChildNodes, insertBefore, item, removeChild, replaceChild, synchronizeChildren, synchronizeChildren
 
Methods inherited from class org.apache.xerces.dom.ChildNode
getNextSibling, getParentNode, getPreviousSibling
 
Methods inherited from class org.apache.xerces.dom.NodeImpl
addEventListener, appendChild, dispatchEvent, finalize, getLocalName, getNamespaceURI, getNodeValue, getPrefix, getReadOnly, getUserData, removeEventListener, setNodeValue, setPrefix, setUserData, supports, toString
 
Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

builtinStringArrays

protected StringArray[] builtinStringArrays

builtinIntegerArrays

protected IntegerArray[] builtinIntegerArrays

builtinFloatArrays

protected FloatArray[] builtinFloatArrays

nonBuiltinTable

protected java.util.Hashtable nonBuiltinTable
Constructor Detail

BondArrayImpl

public BondArrayImpl()

BondArrayImpl

public BondArrayImpl(org.w3c.dom.Element element)

BondArrayImpl

public BondArrayImpl(org.w3c.dom.Document document)
new BondArray in context
Method Detail

add

public void add(Bond bond)
when an Bond is added then it is split over the various StringArrays
Specified by:
add in interface BondArray

size

public int size()
Specified by:
size in interface BondArray

elementAt

public Bond elementAt(int index)
when an Bond is extracted then it is combined from the various StringArrays
Specified by:
elementAt in interface BondArray

delete

public void delete(Bond bond)
Specified by:
delete in interface BondArray

getBuiltinArray

public StringArray getBuiltinArray(int builtinId)
this is rather trick since BondArray is subclasses from Bond and StringArray from StringVal we can extract the array object as scalars and simply cast them
Specified by:
getBuiltinArray in interface BondArray

setBuiltinArray

public void setBuiltinArray(int builtinId,
                            StringArray array)
Specified by:
setBuiltinArray in interface BondArray

getNonBuiltinArray

public StringArray getNonBuiltinArray(java.lang.String name)
Specified by:
getNonBuiltinArray in interface BondArray

setNonBuiltinArray

public void setNonBuiltinArray(java.lang.String name,
                               StringArray array)
Specified by:
setNonBuiltinArray in interface BondArray

deleteNonBuiltinArray

public void deleteNonBuiltinArray(java.lang.String name)
Specified by:
deleteNonBuiltinArray in interface BondArray

processImmediately

public boolean processImmediately()
do not process on creation

processDOM

public void processDOM()
                throws CMLException
Description copied from interface: PMRElement
carries out class-specific processing for subclasses of PMRElement. The default for a generic PMRElement is no-op. Often creates an internal model
Overrides:
processDOM in class CMLBaseImpl
Tags copied from class: PMRElementImpl
Throws:
java.lang.Exception - these can be of many kinds and may include class-specific ones

createArrayElement

public AbstractBuiltinContainer createArrayElement(org.w3c.dom.Document document)
Specified by:
createArrayElement in interface BondArray

updateDOM

public void updateDOM()
               throws CMLException
Overrides:
updateDOM in class CMLBaseImpl
 Class  Tree  Deprecated  Index  Help 
 PREV CLASS   NEXT CLASS FRAMES    NO FRAMES
SUMMARY:  INNER | FIELD | CONSTR | METHOD DETAIL:  FIELD | CONSTR | METHOD