DeltaH, DeltaS, DeltaG values are at the bottom
Trans Free energy of transfer to surface (Bull & Breese, Arch. Biophys. Biochem. 161, 665 (1974) )
% Bur Percentage of buried residues (Janin et al., J. Mol. Biol. 125, 357 (1978) )
% Exp Percentage of exposed residues (Janin et al., J. Mol. Biol. 125, 357 (1978) )
HphoX Hydrophobic index (Ponnuswamy et al., Biochim. Biophys. Acta 623, 301 (1980) )
HphFl Hydrophobicity in folded form (Ponnuswamy et al., BBA 623, 301 (1980) )
HphUf Hydrophobicity in unfolded form (Ponnuswamy et al., BBA 623, 301 (1980) )
HphGn Hydrophobicity gain (Ponnuswamy et al., BBA 623, 301 (1980) )
Polar Polarity (Ponnuswamy et al., Biochim. Biophys. Acta 623, 301 (1980) )
HphAH Surrounding hydrophobicity in a-helix (Ponnuswamy et al., BBA 623, 301 (1980) )
HphBS Surrounding hydrophobicity in b-sheet (Ponnuswamy et al. BBA 623, 301 (1980) )
HphBT Surrounding hydrophobicity in b-turn (Ponnuswamy et al., BBA 623, 301 (1980) )
AccRd Accessibility reduction ratio (Ponnuswamy et al., BBA 623, 301 (1980) )
SurRe Average number of surrounding residues (Ponnuswamy BBA 623, 301 (1980) )
Volum Volume (Chothia, Nature 254, 304 (1975) )
;Flexi Flexibility (Bhaskaran and Ponnuswamy 1988)
Fx0RN Flexibility for no rigid neighbours (Karplus & Schulz, Naturwiss. 72, 212 (1985) )
Fx1RN Flexibility for one rigid neighbour (Karplus & Schulz, Naturwiss. 72, 212 (1985) )
Fx2RN Flexibility for two rigid neighbours (Karplus & Schulz, Naturwiss. 72, 212 (1985) )
HphEi Hydrophobicity (Eisenberg, Ann. Rev. Biochem. 53, 595 (1984) )
AccSS Accessible surface area in the standard state (Rose et al., Sci. 229, 834 (1985) )
AccFl Average accessible surface area in folded proteins (Rose et al., Sci. 229, 834 (1985) )
SuHph Average surrounding hydrophobicity (Manavalan et al. Nature 275, 673 (1978) )
HphiH Hydrophilicity (Hopp and Woods, PNAS 78, 3824 (1981) )
Hypat Hydropathy (Kyte and Doolittle, J. Mol. Biol. 157, 105 (1982) )
HphiP Hydrophilicity from HPLC (Parker et al. Biochemistry 25, 5425 (1986) )
HphoJ Hydrophobicity (Jones, J. Theor. Biol. 125, 357 (1975) )
Refrc Refractivity (Jones, J. Theor. Biol. 125, 357 (1975) )
AHLev Normalized frequency of a-helix with weights (Levitt, Biochem. 17, 4277 (1978) )
BSLev Normalized frequency of b-sheet with weights (Levitt, Biochem. 17, 4277 (1978) )
BTLev Normalized frequency for reverse turn with weights (Levitt, Biochem. 17, 4277
OMH Barrell, Bankier and Drouin (1979)
PEST Signature for rapidly degraded proteins
Charg Charge of amino acids (example scale)
AROM Local concentration of aromatic amino acids
;
>
* Trans Free energy of transfer to surface (Bull & Breese, Arch. Biophys. Biochem. 161, 665 (1974) )
threshold: 0
minval : -1650
maxval : 970
X 0
A 610
R 690
N 890
D 610
C 360
Q 970
E 510
G 810
H 690
I -1450
L -1650
K 460
M -660
F -1520
P -170
S 420
T 290
W -1200
Y -1430
V -750
;
;
>
* AccSA Average accessibility surface area (Janin et al., J. Mol. Biol. 125, 357 (1978) )
threshold:
minval : 15.5
maxval : 103
X 40
A 27.8
R 94.7
N 60.1
D 60.6
C 15.5
Q 68.7
E 68.2
G 24.5
H 50.7
I 22.8
L 27.6
K 103
M 33.5
F 25.5
P 51.5
S 42
T 45
W 34.7
Y 55.2
V 23.7
;
;
>
* % Bur Percentage of buried residues (Janin et al., J. Mol. Biol. 125, 357 (1978) )
threshold:
minval : 0
maxval : 100
X 50
A 51
R 5
N 22
D 19
C 74
Q 16
E 16
G 52
H 34
I 66
L 60
K 3
M 52
F 58
P 25
S 35
T 30
W 49
Y 24
V 64
;
;
>
* % Exp Percentage of exposed residues (Janin et al., J. Mol. Biol. 125, 357 (1978) )
threshold:
minval : 0
maxval : 100
X 50
A 15
R 67
N 49
D 50
C 5
Q 56
E 55
G 10
H 34
I 13
L 16
K 85
M 20
F 10
P 45
S 32
T 32
W 17
Y 41
V 14
;
;
>
* HphoX Hydrophobic index (Ponnuswamy et al., Biochim. Biophys. Acta 623, 301 (1980) )
threshold:
minval : 0
maxval : 3.77
X 1
A .87
R .85
N 9.E-02
D .66
C 1.52
Q 0
E .67
G .1
H .8
I 3.15
L 2.17
K 1.64
M 1.67
F 2.87
P 2.77
S .07
T .07
W 3.77
Y 2.67
V 1.87
;
;
>
* HphFl Hydrophobicity in folded form (Ponnuswamy et al., BBA 623, 301 (1980) )
threshold:
minval : 10.8
maxval : 15.07
X 12
A 12.28
R 11.49
N 11
D 10.97
C 14.93
Q 11.28
E 11.19
G 12.01
H 12.84
I 14.77
L 14.1
K 10.8
M 14.33
F 13.43
P 11.19
S 11.26
T 11.65
W 12.95
Y 13.29
V 15.07
;
;
>
* HphUf Hydrophobicity in unfolded form (Ponnuswamy et al., BBA 623, 301 (1980) )
threshold:
minval : 4
maxval : 5.08
X 4.7
A 4.66
R 4.68
N 4.87
D 4.79
C 4
Q 4.61
E 4.81
G 4.7
H 4.99
I 4.78
L 4.73
K 5.08
M 4.5
F 4.44
P 4.55
S 4.33
T 4.75
W 4.54
Y 4.76
V 4.69
;
;
>
* HphGn Hydrophobicity gain (Ponnuswamy et al., BBA 623, 301 (1980) )
threshold:
minval : 2.12
maxval : 3.36
X 2.6
A 2.63
R 2.45
N 2.27
D 2.29
C 3.36
Q 2.45
E 2.31
G 2.55
H 2.57
I 3.08
L 2.98
K 2.12
M 3.18
F 3.02
P 2.46
S 2.6
T 2.55
W 2.85
Y 2.79
V 3.21
;
;
>
* Polar Polarity (Ponnuswamy et al., Biochim. Biophys. Acta 623, 301 (1980) )
threshold:
minval : 0
maxval : 52
X 5
A 0
R 52
N 3.38
D 40.7
C 1.48
Q 3.53
E 49.91
G 0
H 51.6
I .15
L .45
K 49.5
M 1.43
F .35
P 1.58
S 1.67
T 1.66
W 2.1
Y 1.61
V .13
;
;
>
* HphAH Surrounding hydrophobicity in a-helix (Ponnuswamy et al., BBA 623, 301 (1980) )
threshold:
minval : 10.98
maxval : 15.36
X 13
A 13.65
R 11.28
N 12.24
D 10.98
C 14.49
Q 11.3
E 12.55
G 15.36
H 11.59
I 14.63
L 14.01
K 11.96
M 13.4
F 14.08
P 11.51
S 11.26
T 13
W 12.06
Y 12.64
V 12.88
;
;
>
* HphBS Surrounding hydrophobicity in b-sheet (Ponnuswamy et al. BBA 623, 301 (1980) )
threshold:
minval : 11.79
maxval : 16.49
X 14
A 14.6
R 13.24
N 11.79
D 13.78
C 15.9
Q 12.02
E 13.59
G 14.18
H 15.35
I 14.1
L 16.49
K 13.28
M 16.23
F 14.18
P 14.1
S 13.36
T 14.5
W 13.9
Y 14.76
V 16.3
;
;
>
* HphBT Surrounding hydrophobicity in b-turn (Ponnuswamy et al., BBA 623, 301 (1980) )
threshold:
minval : 9.93
maxval : 15
X 11
A 10.67
R 11.05
N 10.85
D 10.21
C 14.15
Q 11.71
E 11.71
G 10.95
H 12.07
I 12.95
L 13.07
K 9.93
M 15
F 13.27
P 10.62
S 11.18
T 10.53
W 11.41
Y 11.52
V 13.86
;
;
>
* AccRd Accessibility reduction ratio (Ponnuswamy et al., BBA 623, 301 (1980) )
threshold:
minval : 1.79
maxval : 7.69
X 3
A 3.7
R 2.53
N 2.12
D 2.6
C 3.03
Q 2.7
E 3.3
G 3.13
H 3.57
I 7.69
L 5.88
K 1.79
M 5.21
F 6.6
P 2.12
S 2.43
T 2.6
W 6.25
Y 3.03
V 7.14
;
;
>
* SurRe Average number of surrounding residues (Ponnuswamy BBA 623, 301 (1980) )
threshold:
minval : 4.88
maxval : 7.86
X 5
A 6.05
R 5.7
N 5.04
D 4.95
C 7.86
Q 5.45
E 5.1
G 6.16
H 5.8
I 7.51
L 7.37
K 4.88
M 6.39
F 6.62
P 5.65
S 5.53
T 5.81
W 6.98
Y 6.73
V 7.62
;
;
>
* Volum Volume (Chothia, Nature 254, 304 (1975) )
threshold:
minval : 66.4
maxval : 237.6
X 120
A 91.5
R 202
N 135.2
D 124.5
C 118
Q 161.1
E 155.1
G 66.4
H 167.3
I 168.8
L 167.9
K 171.3
M 170.8
F 203.4
P 129.3
S 99.1
T 122.1
W 237.6
Y 203.6
V 141.7
;
;
>
* LFlex Local flexibility (Ragone et al. 1989)
threshold: 1300
minval : 33.96
maxval : 6374.07
X 1000
A 705.42
R 1484.28
N 513.4601
D 34.96
C 2412.56
Q 1087.83
E 1158.66
G 33.18
H 1637.13
I 5979.37
L 4985.73
K 699.69
M 4491.66
F 5203.86
P 431.96
S 174.76
T 601.88
W 6374.07
Y 4291.1
V 4474.42
;
;
>
* Flexi Flexibility (Bhaskaran and Ponnuswamy 1988)
threshold:
minval : 0.295
maxval : 0.529
X 0.4
A .357
R .529
N .463
D .511
C .346
Q .493
E .497
G .544
H .323
I .462
L .365
K .466
M .295
F .314
P .509
S .507
T .444
W .305
Y .42
V .386
;
;
>
* Fx0RN Flexibility for no rigid neighbours (Karplus & Schulz, Naturwiss. 72, 212 (1985) )
threshold: 1
minval : 0.925
maxval : 1.169
X 1
A 1.041
R 1.038
N 1.117
D 1.033
C .96
Q 1.165
E 1.094
G 1.142
H .982
I 1.002
L .967
K 1.093
M .947
F .93
P 1.055
S 1.169
T 1.073
W .925
Y .961
V .982
;
;
>
* Fx1RN Flexibility for one rigid neighbour (Karplus & Schulz, Naturwiss. 72, 212 (1985) )
threshold: 1
minval : 0.862
maxval : 1.089
X 1
A .946
R 1.028
N 1.006
D 1.089
C .878
Q 1.028
E 1.036
G 1.042
H .952
I .892
L .961
K 1.082
M .862
F .912
P 1.085
S 1.048
T 1.051
W .917
Y .93
V .927
;
;
>
* Fx2RN Flexibility for two rigid neighbours (Karplus & Schulz, Naturwiss. 72, 212 (1985) )
threshold:
minval : 0.803
maxval : 1.057
X 0.9
A .892
R .901
N .93
D .932
C .925
Q .885
E .933
G .923
H .894
I .872
L .921
K 1.057
M .804
F .914
P .932
S .923
T .934
W .803
Y .837
V .913
;
;
>
* HphEi Hydrophobicity (Eisenberg, Ann. Rev. Biochem. 53, 595 (1984) )
threshold: 0
minval : -1.76
maxval : 0.73
X 0
A .25
R -1.76
N -.64
D -.72
C .04
Q -.69
E -.62
G .16
H -.4
I .73
L .53
K -1.1
M .26
F .61
P -.07
S -.26
T -.18
W .37
Y .02
V .54
;
;
>
* AccSS Accessible surface area in the standard state (Rose et al., Sci. 229, 834 (1985) )
threshold:
minval : 88.1
maxval : 266.3
X 150
A 118.1
R 256
N 165.5
D 158.7
C 146.1
Q 193.2
E 186.2
G 88.1
H 202.5
I 181
L 193.1
K 225.8
M 203.4
F 222.8
P 146.8
S 129.8
T 152.5
W 266.3
Y 236.8
V 164.5
;
;
>
* AccFl Average accessible surface area in folded proteins (Rose et al., Sci. 229, 834 (1985) )
threshold:
minval : 23
maxval : 110.3
X 40
A 31.5
R 93.8
N 62.2
D 60.9
C 13.9
Q 74
E 72.3
G 25.2
H 46.7
I 23
L 29
K 110.3
M 30.5
F 28.7
P 53.7
S 44.2
T 46
W 41.7
Y 59.1
V 23.5
;
;
>
* SuHph Average surrounding hydrophobicity (Manavalan et al. Nature 275, 673 (1978) )
threshold:
minval : 10.85
maxval : 15.71
X 12
A 12.97
R 11.72
N 11.42
D 10.85
C 14.64
Q 11.76
E 11.89
G 12.43
H 12.16
I 15.67
L 14.9
K 11.36
M 14.39
F 14
P 11.37
S 11.23
T 11.69
W 13.93
Y 13.42
V 15.71
;
;
>
* HphiH Hydrophilicity (Hopp and Woods, PNAS 78, 3824 (1981) )
threshold: 0
minval : -3.4
maxval : 3
X 0
A -.5
R 3
N .2
D 3
C -1
Q .2
E 3
G 0
H -.5
I -1.8
L -1.8
K 3
M -1.3
F -2.5
P 0
S .3
T -.4
W -3.4
Y -2.3
V -1.5
;
;
>
* Hypat Hydropathy (Kyte and Doolittle, J. Mol. Biol. 157, 105 (1982) )
threshold: 0
minval : -3
maxval : 3
X 0
A 1.8
R -4.5
N -3.5
D -3.5
C 2.5
Q -3.5
E -3.5
G -.4
H -3.2
I 4.5
L 3.8
K -3.9
M 1.9
F 2.8
P -1.6
S -.8
T -.7
W -.9
Y -1.3
V 4.2
;
;
>
* HphiP Hydrophilicity from HPLC (Parker et al. Biochemistry 25, 5425 (1986) )
threshold: 0
minval : 10
maxval : -10
X 0
A 2.1
R 4.2
N 7
D 10
C 1.4
Q 6
E 7.8
G 5.7
H 2.1
I -8
L -9.2
K 5.7
M -4.2
F -9.2
P 2.1
S 6.5
T 5.2
W -10
Y -1.9
V -3.7
;
;
>
* HphoJ Hydrophobicity (Jones, J. Theor. Biol. 125, 357 (1975) )
threshold:
minval : 0
maxval : 3.77
X 1
A .87
R .85
N 0.09
D .66
C 1.52
Q 0
E .67
G .1
H .87
I 3.15
L 2.17
K 1.64
M 1.67
F 2.87
P 2.77
S .07
T .07
W 3.77
Y 2.67
V 1.87
;
;
>
* Refrc Refractivity (Jones, J. Theor. Biol. 125, 357 (1975) )
threshold:
minval : 0
maxval : 42.53
X 15
A 4.34
R 26.66
N 13.28
D 12
C 35.77
Q 17.56
E 17.26
G 0
H 21.81
I 19.06
L 18.78
K 21.29
M 21.64
F 29.4
P 10.93
S 6.35
T 11.01
W 42.53
Y 31.53
V 13.92
;
;
>
* AHLev Normalized frequency of a-helix with weights (Levitt, Biochem. 17, 4277 (1978) )
threshold:
minval : 0.52
maxval : 1.47
X 1
A 1.29
R .96
N .9
D 1.04
C 1.11
Q 1.27
E 1.44
G .56
H 1.22
I .97
L 1.3
K 1.23
M 1.47
F 1.07
P .52
S .82
T .82
W .99
Y .72
V .91
;
;
>
* BSLev Normalized frequency of b-sheet with weights (Levitt, Biochem. 17, 4277 (1978) )
threshold:
minval : 0.64
maxval : 1.49
X 1
A .9
R .99
N .76
D .72
C .74
Q .8
E .75
G .92
H 1.08
I 1.45
L 1.02
K .77
M .97
F 1.32
P .64
S .95
T 1.21
W 1.14
Y 1.25
V 1.49
;
;
>
* BTLev Normalized frequency for reverse turn with weights (Levitt, Biochem. 17, 4277 (1978) )
threshold:
minval : 0.39
maxval : 1.91
X 1
A .78
R .88
N 1.28
D 1.41
C .8
Q .97
E 1
G 1.64
H .69
I .51
L .59
K .96
M .39
F .58
P 1.91
S 1.33
T 1.03
W .75
Y 1.05
V .47
;
;
>
* OMH Barrell, Bankier and Drouin (1979)
threshold: 0
minval : -1.3
maxval : 1.9
X 0
A -0.4
R -0.59
N -0.92
D -1.3
C 0.17
Q -0.91
E -1.2
G -0.67
H -0.64
I 1.2
L 1.2
K -0.67
M 1.0
F 1.9
P -0.49
S -0.55
T -0.28
W 0.5
Y 1.7
V 0.91
;
;
>
* PEST Signature for rapidly degraded proteins
threshold:
minval : 0
maxval : 1
X 0
A 0
R 0
N 0
D 0
C 0
Q 0
E 1
G 0
H 0
I 0
L 0
K 0
M 0
F 0
P 1
S 1
T 1
W 0
Y 0
V 0
;
;
>
* Charg Charge of amino acids (example scale)
threshold: 0
minval : -1
maxval : 1
X 0
A 0
R 1
N 0
D -1
C 0
Q 0
E -1
G 0
H 0.5
I 0
L 0
K 1
M 0
F 0
P 0
S 0
T 0
W 0
Y 0
V 0
;
;
>
* AROM Local concentration of aromatic amino acids
threshold:
minval : 0
maxval : 1
X 0
A 0
R 0
N 0
D 0
C 0
Q 0
E 0
G 0
H 0
I 0
L 0
K 0
M 0
F 1
P 0
S 0
T 0
W 1
Y 1
V 0
;
;
>
AA DeltaH DeltaS DeltaG Values
X
A -61.20 38.51 -60.58
R -94.26 72.11 -115.75
N -91.80 58.59 -109.26
D -137.30 57.00 -154.29
C -39.93 50.71 -55.04
Q -96.73 68.01 -117.00
E -142.23 66.42 -162.02
G -42.40 29.70 -51.25
H -71.43 -42.10 -58.88
I -66.13 66.27 -85.88
L -66.13 66.27 -85.88
K -42.29 75.87 -64.90
M -46.06 74.29 -68.20
F -52.83 -77.93 -29.61
P -71.06 13.33 -75.03
S -84.90 46.97 -98.90
T -94.20 56.58 -111.06
W -39.93 -137.89 1.16
Y -95.43 -34.14 -85.26
V -61.2 56.85 -78.14