{"id":3576,"date":"2011-03-04T17:02:15","date_gmt":"2011-03-04T17:02:15","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=3576"},"modified":"2011-03-04T17:14:29","modified_gmt":"2011-03-04T17:14:29","slug":"the-formation-of-cyanohydrins-re-writing-the-text-books-or","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576","title":{"rendered":"The formation of cyanohydrins: re-writing the text books. ! or ?"},"content":{"rendered":"
\n

Nucleophilic addition of cyanide to a ketone or aldehyde is a standard reaction for introductory organic chemistry. But is all as it seems? The reaction is often represented as below<\/a>, and this seems simple enough.<\/p>\n

\"\"<\/a>

Cyanohydrin formation.<\/p><\/div>\n

But attention to detail suggests that, HCN being a weak acid, there will be only a very small concentration of cyanide anion in the presence of HCl. There are other aspects which (if fussy) one might quibble with. The arrow pushing originates at the negative sign of the cyanide group. It is slightly more accurate to suggest that any arrow shown originates at an electron pair rather than necessarily a charge (think borohydride anion).<\/p>\n

\"\"<\/a>

Possible sources of electron pairs in "HCN"<\/p><\/div>\n

In cyanide anion, the relevant electron pair is shown above in red (a). But if most of this anion is really protonated in HCl, then the electron pair resides in a H-C bond (b). Or, if we put the proton on the nitrogen, then again it becomes a lone pair (c). So, can we formulate a mechanism for cyanohydrin formation for acidic solutions, which avoids the need to use (a)?<\/p>\n

\"\"<\/a>

7-ring mechanism for cyanohydrin formation.<\/p><\/div>\n

We need to borrow a water molecule, and then isomerise the HCN to HNC, before subjecting the combination to a cyclic reaction. Is this viable? To answer that, we will do a \u03c9B97XD\/6-311G(d,p)\/SCRF=water calculation<\/a>. Solvating this reaction with both (at least) one explicit water, and a continuum field model is crucial. The calculated free energy of activation for this process with respect to HCN+H2<\/sub>O+carbonyl is 30.0 kcal\/mol. This is a bit high for a reaction that occurs readily at room temperatures, but perhaps with a better model which includes more explicit water molecules, it might be regarded as a reasonable alternative to the cyanide anion mechanism.<\/p>\n

\"\"

Transition state for cyanohydrin formation. Click for 3D<\/p><\/div>Are there any other possibilities? Well, one might be to protonate the carbonyl group first using that HCl. This might activate the carbonyl group towards nucleophilic attack (the Prins reaction), and hence make it more reactive. This counteracts the intrinsic low nucleophilicity of a H-C bond \u00a0(compared to e.g.<\/em> a lone pair).<\/p>\n

\"\"<\/a>

Alternative mechanism for cyanohydrin formation<\/p><\/div>\n

This results in a 6-ring transition state<\/a> with an activation free energy of 33.4 kcal\/mol with respect to \u00a0HCN+H2<\/sub>O+protonated carbonyl. This transition state has a very unusual feature, namely water acting as a base removing the proton from HCN, and the same carbon that is losing this proton is also forming a new C-C bond to make the cyanohydrin. Such a bimolecular displacement at an sp-hybridized carbon centre is quite unusual (and it also happens with retention of “configuration” at the carbon, an SN<\/sub>i reaction). Notice also that the proton removal occurs as a linear geometry, and the carbon attacks the (protonated) carbonyl at 111°.<\/p>\n

\"\"

6-ring transition state. Click for 3D<\/p><\/div>What have we learnt? Well, that quite subtle alternatives to the text-book arrow pushing for the formation of a cyanohydrin are possible. There may be more which have not yet been located! These cyclic (or almost cyclic) mechanisms solve the problem of using cyanide anion in HCl solutions, and their predicted activation energies are not entirely unreasonable. Whilst the above do not represent a definitive answer to this mechanism, it does suggest that many a text-book diagram used by students may deserve a re-think, or at least a calculation!<\/p>\n

 <\/p>\n\n<\/div> ","protected":false},"excerpt":{"rendered":"

Nucleophilic addition of cyanide to a ketone or aldehyde is a standard reaction for introductory organic chemistry. But is all as it seems? The reaction is often represented as below, and this seems simple enough. But attention to detail suggests that, HCN being a weak acid, there will be only a very small concentration of […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":false,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[],"tags":[467,352,466,425,426,373],"ppma_author":[2661],"class_list":["post-3576","post","type-post","status-publish","format-standard","hentry","tag-acidic-solutions","tag-activation-free-energy","tag-calculated-free-energy","tag-cyanohydrin","tag-mechanism","tag-tutorial-material"],"yoast_head":"\nThe formation of cyanohydrins: re-writing the text books. ! or ? - Henry Rzepa's Blog<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"The formation of cyanohydrins: re-writing the text books. ! or ? - Henry Rzepa's Blog\" \/>\n<meta property=\"og:description\" content=\"Nucleophilic addition of cyanide to a ketone or aldehyde is a standard reaction for introductory organic chemistry. But is all as it seems? The reaction is often represented as below, and this seems simple enough. But attention to detail suggests that, HCN being a weak acid, there will be only a very small concentration of […]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576\" \/>\n<meta property=\"og:site_name\" content=\"Henry Rzepa's Blog\" \/>\n<meta property=\"article:published_time\" content=\"2011-03-04T17:02:15+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2011-03-04T17:14:29+00:00\" \/>\n<meta property=\"og:image\" content=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/cyano1.jpg\" \/>\n<meta name=\"author\" content=\"Henry Rzepa\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"Henry Rzepa\" \/>\n\t<meta name=\"twitter:label2\" content=\"Estimated reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"3 minutes\" \/>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"The formation of cyanohydrins: re-writing the text books. ! or ? - Henry Rzepa's Blog","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576","og_locale":"en_GB","og_type":"article","og_title":"The formation of cyanohydrins: re-writing the text books. ! or ? - Henry Rzepa's Blog","og_description":"Nucleophilic addition of cyanide to a ketone or aldehyde is a standard reaction for introductory organic chemistry. But is all as it seems? The reaction is often represented as below, and this seems simple enough. But attention to detail suggests that, HCN being a weak acid, there will be only a very small concentration of […]","og_url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576","og_site_name":"Henry Rzepa's Blog","article_published_time":"2011-03-04T17:02:15+00:00","article_modified_time":"2011-03-04T17:14:29+00:00","og_image":[{"url":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/cyano1.jpg","type":"","width":"","height":""}],"author":"Henry Rzepa","twitter_card":"summary_large_image","twitter_misc":{"Written by":"Henry Rzepa","Estimated reading time":"3 minutes"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"Article","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#article","isPartOf":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576"},"author":{"name":"Henry Rzepa","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#\/schema\/person\/2b40f7b9c872a4dc1547e040a11b6281"},"headline":"The formation of cyanohydrins: re-writing the text books. ! or ?","datePublished":"2011-03-04T17:02:15+00:00","dateModified":"2011-03-04T17:14:29+00:00","mainEntityOfPage":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576"},"wordCount":638,"commentCount":1,"image":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#primaryimage"},"thumbnailUrl":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/cyano1.jpg","keywords":["acidic solutions","activation free energy","calculated free energy","cyanohydrin","mechanism","Tutorial material"],"inLanguage":"en-GB","potentialAction":[{"@type":"CommentAction","name":"Comment","target":["https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#respond"]}]},{"@type":"WebPage","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576","url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576","name":"The formation of cyanohydrins: re-writing the text books. ! or ? - Henry Rzepa's Blog","isPartOf":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#website"},"primaryImageOfPage":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#primaryimage"},"image":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#primaryimage"},"thumbnailUrl":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/cyano1.jpg","datePublished":"2011-03-04T17:02:15+00:00","dateModified":"2011-03-04T17:14:29+00:00","author":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#\/schema\/person\/2b40f7b9c872a4dc1547e040a11b6281"},"breadcrumb":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#breadcrumb"},"inLanguage":"en-GB","potentialAction":[{"@type":"ReadAction","target":["https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576"]}]},{"@type":"ImageObject","inLanguage":"en-GB","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#primaryimage","url":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/cyano1.jpg","contentUrl":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/cyano1.jpg"},{"@type":"BreadcrumbList","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3576#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog"},{"@type":"ListItem","position":2,"name":"The formation of cyanohydrins: re-writing the text books. ! or ?"}]},{"@type":"WebSite","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#website","url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/","name":"Henry Rzepa's Blog","description":"Chemistry with a twist","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-GB"},{"@type":"Person","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#\/schema\/person\/2b40f7b9c872a4dc1547e040a11b6281","name":"Henry Rzepa","image":{"@type":"ImageObject","inLanguage":"en-GB","@id":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g370be3a7397865e4fd161aefeb0a5a85","url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","contentUrl":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","caption":"Henry Rzepa"},"description":"Henry Rzepa is Emeritus Professor of Computational Chemistry at Imperial College London.","sameAs":["https:\/\/orcid.org\/0000-0002-8635-8390"],"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?author=1"}]}},"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/pDef7-VG","jetpack-related-posts":[],"jetpack_likes_enabled":false,"authors":[{"term_id":2661,"user_id":1,"is_guest":0,"slug":"admin","display_name":"Henry Rzepa","avatar_url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","0":null,"1":"","2":"","3":"","4":"","5":"","6":"","7":"","8":""}],"_links":{"self":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/3576","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=3576"}],"version-history":[{"count":0,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/3576\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=3576"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=3576"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=3576"},{"taxonomy":"author","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fppma_author&post=3576"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}