{"id":27302,"date":"2024-07-31T10:29:35","date_gmt":"2024-07-31T09:29:35","guid":{"rendered":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=27302"},"modified":"2024-08-20T09:11:50","modified_gmt":"2024-08-20T08:11:50","slug":"revisiting-open-transparent-peer-review","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=27302","title":{"rendered":"Revisiting open\/transparent peer review."},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"27302\">\n<p>Back in 2017, I was asked to peer review an article and its author asked if I would like the review to be &#8220;open&#8221; &#8211; that is that my name would be shown as a reviewer; <span id=\"cite_ITEM-27302-0\" name=\"citation\"><a href=\"#ITEM-27302-0\">[1]<\/a><\/span> Replication in Science was &#8211; and still is &#8211; a hot topic and I had taken the opportunity with this article to try to (successfully I might add) replicate its main (computational) findings. This is something relatively easy to do with computation, but of course far more of challenge to do for experimental work for obvious reasons. I still regularly attempt some level of replication when I review articles nowadays.<\/p>\n<p>So on to 2024, when I was asked &#8211; this time as an author &#8211; whether I would like the reviews of our own article to be so included, <span id=\"cite_ITEM-27302-1\" name=\"citation\"><a href=\"#ITEM-27302-1\">[2]<\/a><\/span> now called transparent peer review.<img decoding=\"async\" class=\"aligncenter size-large wp-image-27306\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2024\/07\/Screenshot-2024-07-31-at-09.51.23-1024x456.jpg\" alt=\"\" width=\"425\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2024\/07\/Screenshot-2024-07-31-at-09.51.23-1024x456.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2024\/07\/Screenshot-2024-07-31-at-09.51.23-300x134.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2024\/07\/Screenshot-2024-07-31-at-09.51.23-768x342.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2024\/07\/Screenshot-2024-07-31-at-09.51.23-1536x684.jpg 1536w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2024\/07\/Screenshot-2024-07-31-at-09.51.23-2048x912.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/p>\n<p>Now the open aspects have been inverted! Whereas the\u00a0identity of the reviewers continues to be withheld, their actual reviews are now available to be read, along with the authors&#8217; responses. There is still no way in which any attempt at &#8220;replication&#8221; can be indicated &#8211; the reviews themselves are in free-text form and the reader has to judge for themselves what they might mean and whether replication was part of the process.\u00a0I also wonder if replication whilst preserving reviewer anonymity can be achieved?<\/p>\n<p>Not all journals by the Royal Society of\u00a0Chemistry publisher offer transparent review\u00a0and it is optional of course.\u00a0But a search of the string &#8220;<em>To support increased transparency, we offer authors the option to publish the peer review history alongside their article<\/em>&#8221; suggests around 73 articles in several journals have such review. What is more difficult to establish is what proportion of published articles expose their reviews &#8211; is it a high or a low percentage? \u00a0Time will probably reveal this aspect.<\/p>\n<p>It is also worth noting another experiment along these lines, the so-called <a href=\"https:\/\/www.octopus.ac\">Octopus publishing<\/a><span id=\"cite_ITEM-27302-2\" name=\"citation\"><a href=\"#ITEM-27302-2\">[3]<\/a><\/span> model, where a scholarly article can have up to eight distinct components, each in theory written by different authors and where any one section could have several contributions &#8211; \u00a0including a replication study. Each set of authors gets credit, in the form of one or more publication DOIs. This publishing experiment has been running now for almost four\u00a0years, although I note there are few if any submissions in the area of physical sciences and chemistry.<\/p>\n<p>It might be fair to suggest that with innovations such as these, scholarly publishing is likely to evolve significantly over the next few years.<\/p>\n<h2>References<\/h2>\n    <ol class=\"kcite-bibliography csl-bib-body\"><li id=\"ITEM-27302-1\">D.C. Braddock, S. Lee, and H.S. Rzepa, \"Modelling kinetic isotope effects for Swern oxidation using DFT-based transition state theory\", <i>Digital Discovery<\/i>, vol. 3, pp. 1496-1508, 2024. <a href=\"https:\/\/doi.org\/10.1039\/d3dd00246b\">https:\/\/doi.org\/10.1039\/d3dd00246b<\/a>\n\n<\/li>\n<li id=\"ITEM-27302-2\">H. Rzepa, \"Octopus publishing: dis-assembling the research article into eight components.\", 2021. <a href=\"https:\/\/doi.org\/10.59350\/qxjaz-a2298\">https:\/\/doi.org\/10.59350\/qxjaz-a2298<\/a>\n\n<\/li>\n<\/ol>\n\n<\/div> <!-- kcite-section 27302 -->","protected":false},"excerpt":{"rendered":"<p>Back in 2017, I was asked to peer review an article and its author asked if I would like the review to be &#8220;open&#8221; &#8211; that is that my name would be shown as a reviewer; Replication in Science was &#8211; and still is &#8211; a hot topic and I had taken the opportunity with [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[4],"tags":[],"ppma_author":[2661],"class_list":["post-27302","post","type-post","status-publish","format-standard","hentry","category-interesting-chemistry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.5 - 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This debate has been raging ever since preprint servers were introduced as far back as 1991! Indeed, during my recent submission of a journal article, one of the questions asked was whether the article was already deposited in such a preprint server (in a positive sense,\u2026","rel":"","context":"In \"Interesting chemistry\"","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?tag=interesting-chemistry"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":20634,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=20634","url_meta":{"origin":27302,"position":1},"title":"Questions about the (metadata) components of a scientific article.","author":"Henry Rzepa","date":"April 8, 2019","format":false,"excerpt":"The conventional procedures for reporting analysis or new results in science is to compose an \"article\", augment that perhaps with \"supporting information\" or \"SI\", submit to a journal which undertakes peer review, with revision as necessary for acceptance and finally publication. If errors in the original are later identified, a\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":22270,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=22270","url_meta":{"origin":27302,"position":2},"title":"Discussion of (the) Room-temperature chemical synthesis of dicarbon &#8211; open and transparent science.","author":"Henry Rzepa","date":"May 6, 2020","format":false,"excerpt":"A little more than a year ago, a ChemRxiv pre-print appeared bearing the title referenced in this post, which immediately piqued my curiosity. The report presented persuasive evidence, in the form of trapping experiments, that dicarbon or C2 had been formed by the following chemical synthesis. Here I describe some\u2026","rel":"","context":"In &quot;Interesting chemistry&quot;","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=4"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":18922,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=18922","url_meta":{"origin":27302,"position":3},"title":"Two stories about Open Peer Review (OPR), the next stage in  Open Access (OA).","author":"Henry Rzepa","date":"October 5, 2017","format":false,"excerpt":"We have heard a lot about OA or Open Access (of journal articles) in the last five years, often in association with the APC (Article Processing Charge) model of funding such OA availability. Rather less discussed is how the model of the peer review of these articles might also evolve\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2017\/10\/328-1024x635.jpg?resize=350%2C200","width":350,"height":200},"classes":[]},{"id":21037,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=21037","url_meta":{"origin":27302,"position":4},"title":"ChemRxiv. Why?","author":"Henry Rzepa","date":"June 5, 2019","format":false,"excerpt":"In August 2016, the launch of a chemistry pre-print service ChemRxiv was announced. I was phoned a day or so later by a staff journalist at C&E News for my opinion. The only comment that was retained for their report was my instantaneous feeling that \"the community needed a chemistry\u2026","rel":"","context":"In &quot;Interesting chemistry&quot;","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=4"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":14005,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=14005","url_meta":{"origin":27302,"position":5},"title":"The status of blogging as scientific communication.","author":"Henry Rzepa","date":"May 10, 2015","format":false,"excerpt":"Blogging in chemistry remains something of a niche activity, albeit with a variety of\u00a0different styles. The most common is\u00a0commentary or opinion on the scientific literature or conferencing, serving to highlight what their author considers interesting or important developments. There are even metajournals that aggregate such commentaries. The question therefore occasionally\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]}],"jetpack_likes_enabled":false,"authors":[{"term_id":2661,"user_id":1,"is_guest":0,"slug":"admin","display_name":"Henry Rzepa","avatar_url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","0":null,"1":"","2":"","3":"","4":"","5":"","6":"","7":"","8":""}],"_links":{"self":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/27302","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=27302"}],"version-history":[{"count":11,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/27302\/revisions"}],"predecessor-version":[{"id":27386,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/27302\/revisions\/27386"}],"wp:attachment":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=27302"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=27302"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=27302"},{"taxonomy":"author","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fppma_author&post=27302"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}