{"id":26419,"date":"2023-09-12T18:06:18","date_gmt":"2023-09-12T17:06:18","guid":{"rendered":"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=26419"},"modified":"2023-09-25T18:10:00","modified_gmt":"2023-09-25T17:10:00","slug":"improving-the-science-blog-the-rogue-scholar-service","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=26419","title":{"rendered":"Improving the Science blog &#8211; The Rogue Scholar service."},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"26419\">\n<p>Some <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=1459\" target=\"_blank\" rel=\"noopener\">13 years ago<\/a>, I speculated about the longevity of the type of science communication then (and still now) represented by Blogs. I noted one new project called ArchivePress that was looking into providing solutions equivalent to what scientific journals have done for some 350 years of science communication. The link to ArchivePress no longer works, but details of the project can still be found <a href=\"https:\/\/www.dcc.ac.uk\/sites\/default\/files\/documents\/events\/dcc-2009\/programme\/posters\/ArchivePress_IDCC_Poster.pdf\" target=\"_blank\" rel=\"noopener\">here<\/a>. Since then the technology and infrastructure has moved on, with a new backbone provided by the use of persistent identifiers (PIDs) in the form of DOIs. The PID ecosystem is now extensive and so a revival of the concept has recently been launched called <a href=\"https:\/\/rogue-scholar.org\" target=\"_blank\" rel=\"noopener\">The Rogue Scholar<\/a>. Here I take a look at some of is features and illustrate these with application to this blog.<\/p>\n<p><a href=\"https:\/\/rogue-scholar.org\"><img decoding=\"async\" class=\"aligncenter size-medium wp-image-26428\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-77-300x189.jpg\" alt=\"\" width=\"540\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-77-300x189.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-77-1024x644.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-77-768x483.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-77.jpg 1336w\" sizes=\"(max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p>To quote its aims &#8220;The Rogue Scholar improves your science blog in important ways, including full-text search, long-term archiving, DOIs and metadata&#8221;. Lets take these four ways and compare them with how scientific journals function.<\/p>\n<ol>\n<li><strong>Full text search<\/strong>. The traditional journal is full-text indexed by its publisher, but of course there are many science publishers out there and they focus on indexing only their own journals. There are an estimated 30,000+ science journals, covered by commercial abstracting agencies such as SciFinder. A search engine that aggregates full text searches across (most?) journals is Google of course. Type a full text search string, enclosing it in quotes to get a literal search of the entire string,<sup>\u2021<\/sup> and you are quite likely to find the journal article. Try this for yourself and report back if it does not work. If you try scholar.google.com instead, it will not work (even using the Advanced search\/Exact phrase constraint). Try then some text from a blog<sup>\u2020<\/sup> and again with scholar.google.com it will not work but with Google it does (I have not tried other search engines).<img decoding=\"async\" class=\"aligncenter size-medium wp-image-26429\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-78.jpg\" alt=\"\" width=\"400\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-78.jpg 1140w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-78-300x191.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-78-1024x652.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-78-768x489.jpg 768w\" sizes=\"(max-width: 1140px) 100vw, 1140px\" \/>\n<ul>\n<li style=\"list-style-type: none;\">\n<ul>\n<li>Now try eg the blog search using RogueScholar and you get the successful result shown below.<br \/>\n<img loading=\"lazy\" decoding=\"async\" class=\"aligncenter size-medium wp-image-26430\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-79-300x175.jpg\" alt=\"\" width=\"300\" height=\"175\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-79-300x175.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-79-1024x599.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-79-768x449.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/09\/Screenshot-79.jpg 1262w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/li>\n<li>Full &#8220;advanced mode&#8221; searching is of course second nature to chemists, who apply a variety of fielded or constrained searches are part of their regular routine (including eg chemical substructure searching), but you often need specialist abstracting and indexing agencies such as Scifinder for this. But RogueScholar will offer constrained searches I understand at some stage, based on &#8220;metadata&#8221; and so I will take this topic next.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li><strong>MetaData and DOIs<\/strong>. When a journal article is published, part of the process is to gather metadata about the article and submit it to a metadata aggregating agency such as CrossRef. In exchange, the latter offer a DOI which functions as a unique and persistent identifier for that article. The metadata terms can be used in a constrained search with <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=25918\">CrossRef<\/a>, and with <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=21080\">DataCite for FAIR data<\/a>. RogueScholar does exactly the same, it gathers metadata from a registered blog post, including ORCID identifiers associated with the post, registers it and enables searching. Try e.g. <a href=\"https:\/\/rogue-scholar.org\/posts?page=1&amp;query=0000-0003-3315-3524\">0000-0003-3315-3524<\/a> as a search term and see what you get. This also works for DOIs (try <a href=\"https:\/\/rogue-scholar.org\/posts?page=1&amp;query=10.59350%2F65c45-3ew97\">10.59350\/65c45-3ew97<\/a> as a search term). So here too, we can see parity emerging with conventional journal publishing.<\/li>\n<li>The final component is <strong>long-term archiving<\/strong>. Again journals have been doing this for a long time (on paper) and in the last 30 years or so in digital form. Blogs have until now lacked this and here again RogueScholar is promising such long term archiving in its next iteration.\n<ul>\n<li>This actually raises one interesting, albeit difficult, aspect of blogs &#8211; one however that may in fact be somewhat unique to this particular blog. The topic of <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=8\" target=\"_blank\" rel=\"noopener\">my very first post<\/a> here back in 2008 was how interactive 3D molecular models could be included in the post itself to help the reader explore the chemical points\u00a0I was trying to make.\u00a0Back then I regarded it as something that could not be so easily done as part of journal articles<span id=\"cite_ITEM-26419-0\" name=\"citation\"><a href=\"#ITEM-26419-0\">[1]<\/a><\/span> (although you do see it nowadays), but that feature certainly presents a challenge to long term archival! I do not see a solution for this one on the horizon.<\/li>\n<\/ul>\n<\/li>\n<\/ol>\n<p>Rogue Scholar is still a very young service, and no doubt will evolve rapidly from this point, so I may revisit in say six months time to see how it has come along. Meanwhile, try it out and see what you think. And because science blogs can now be assigned a DOI on the same level as journal articles, they too can join the so-called universe of &#8220;<a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=25726\">Knowledge or PID graphs<\/a>&#8220;<span id=\"cite_ITEM-26419-1\" name=\"citation\"><a href=\"#ITEM-26419-1\">[2]<\/a><\/span>.<\/p>\n<hr \/>\n<p><sup>\u2021<\/sup> For example &#8220;<em>In 2022, bicyclo[3.1.1]heptanes were proposed to mimic the fragment of meta-substituted benzenes in biologically active compounds<\/em>&#8221;<br \/>\n<sup>\u2020<\/sup> &#8220;<em>The schematic representation of a chemical reaction mechanism is often drawn using a palette of arrows connecting or annotating the various molecular structures involved. These can be selected from a chemical arrows palette, taken for this purpose from the commonly used structure drawing program Chemdraw<\/em>.&#8221;<\/p>\n<hr \/>\n<p>This post has DOI: <a href=\"https:\/\/doi.org\/10.59350\/8m2d8-47b52\">10.59350\/8m2d8-47b52<\/a><\/p>\n<h2>References<\/h2>\n    <ol class=\"kcite-bibliography csl-bib-body\"><li id=\"ITEM-26419-0\">D. James, B.J. Whitaker, C. Hildyard, H.S. Rzepa, O. Casher, J.M. Goodman, D. Riddick, and P. Murray\u2010Rust, \"The case for content integrity in electronic chemistry journals: The CLIC project\", <i>New Review of Information Networking<\/i>, vol. 1, pp. 61-69, 1995. <a href=\"https:\/\/doi.org\/10.1080\/13614579509516846\">https:\/\/doi.org\/10.1080\/13614579509516846<\/a>\n\n<\/li>\n<li id=\"ITEM-26419-1\">H. Cousijn, R. Braukmann, M. Fenner, C. Ferguson, R. van Horik, R. Lammey, A. Meadows, and S. Lambert, \"Connected Research: The Potential of the PID Graph\", <i>Patterns<\/i>, vol. 2, pp. 100180, 2021. <a href=\"https:\/\/doi.org\/10.1016\/j.patter.2020.100180\">https:\/\/doi.org\/10.1016\/j.patter.2020.100180<\/a>\n\n<\/li>\n<\/ol>\n\n<\/div> <!-- kcite-section 26419 -->","protected":false},"excerpt":{"rendered":"<p>Some 13 years ago, I speculated about the longevity of the type of science communication then (and still now) represented by Blogs. I noted one new project called ArchivePress that was looking into providing solutions equivalent to what scientific journals have done for some 350 years of science communication. The link to ArchivePress no longer [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[],"tags":[],"ppma_author":[2661],"class_list":["post-26419","post","type-post","status-publish","format-standard","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.5 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Improving the Science blog - The Rogue Scholar service. - Henry Rzepa&#039;s Blog<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/doi.org\/10.59350\/8m2d8-47b52\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Improving the Science blog - The Rogue Scholar service. - Henry Rzepa&#039;s Blog\" \/>\n<meta property=\"og:description\" content=\"Some 13 years ago, I speculated about the longevity of the type of science communication then (and still now) represented by Blogs. I noted one new project called ArchivePress that was looking into providing solutions equivalent to what scientific journals have done for some 350 years of science communication. 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This was in part induced by my discovering a blog plugin called Kcite, which allow a journal articles to be appended to the blog in the form of a numbered reference\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":29562,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=29562","url_meta":{"origin":26419,"position":1},"title":"The spin-offs from adding citations to blog posts.","author":"Henry Rzepa","date":"August 19, 2025","format":false,"excerpt":"I started adding citations to my blog posts around 2012 using the Kcite plugin.\u2021 Rogue Scholar is a service that monitors registered blog sources and adds all sorts of value to the original post, including identifying such citations and creating a list of them. I show the results for the\u2026","rel":"","context":"In &quot;Interesting chemistry&quot;","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=4"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":19366,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=19366","url_meta":{"origin":26419,"position":2},"title":"PIDapalooza 2018. A  conference like no other!","author":"Henry Rzepa","date":"January 23, 2018","format":false,"excerpt":"Another occasional conference report (day 1). So why is one about \"persistent identifiers\" important, and particularly to the chemistry domain? The PID most familiar to most chemists is the DOI (digital object identifier). In fact there are many; some 60 types have been collected by ORCID (themselves purveyors of researcher\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2018\/01\/PIDapalooza2018-723x1024.jpg?resize=350%2C200","width":350,"height":200},"classes":[]},{"id":26698,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=26698","url_meta":{"origin":26419,"position":3},"title":"Scholarly journals vs Scholarly Blogs.","author":"Henry Rzepa","date":"January 12, 2024","format":false,"excerpt":"First, a very brief history of scholarly publishing, starting in 1665 when scientific journals started to be published by learned societies. This model continued until the 1950s, when commercial publishers such as Pergamon Press started with their USP (unique selling point) of rapid time to publication of ~3 months, compared\u2026","rel":"","context":"In \"Interesting chemistry\"","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?tag=interesting-chemistry"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":10736,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=10736","url_meta":{"origin":26419,"position":4},"title":"Research data and the &#8220;h-index&#8221;.","author":"Henry Rzepa","date":"June 24, 2013","format":false,"excerpt":"The blog post by Rich Apodaca entitled \"The Horrifying Future of Scientific Communication\" is very thought provoking and well worth reading. He takes us through disruptive innovation, and how it might impact upon how scientists communicate their knowledge. One solution floated for us to ponder is that \"supporting Information, combined\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":4688,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=4688","url_meta":{"origin":26419,"position":5},"title":"Breakdowns in communication: the two cultures","author":"Henry Rzepa","date":"August 2, 2011","format":false,"excerpt":"In his famous lecture in 1959, C. P. Snow wrote about the breakdown in communications between\u00a0the \"two cultures\" of modern\u00a0society \u2014 the\u00a0sciences and the\u00a0humanities (arts). That was then. This is now, and the occasion of my visit to a spectacular \"city of arts and sciences complex\" in Europe. An un-missable\u2026","rel":"","context":"In &quot;General&quot;","block_context":{"text":"General","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=1"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/08\/CGCG.jpg?resize=350%2C200","width":350,"height":200},"classes":[]}],"jetpack_likes_enabled":false,"authors":[{"term_id":2661,"user_id":1,"is_guest":0,"slug":"admin","display_name":"Henry Rzepa","avatar_url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","0":null,"1":"","2":"","3":"","4":"","5":"","6":"","7":"","8":""}],"_links":{"self":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/26419","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=26419"}],"version-history":[{"count":13,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/26419\/revisions"}],"predecessor-version":[{"id":26511,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/26419\/revisions\/26511"}],"wp:attachment":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=26419"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=26419"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=26419"},{"taxonomy":"author","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fppma_author&post=26419"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}