{"id":23391,"date":"2021-02-28T07:52:17","date_gmt":"2021-02-28T07:52:17","guid":{"rendered":"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=23391"},"modified":"2021-03-19T07:01:14","modified_gmt":"2021-03-19T07:01:14","slug":"the-chemistry-of-scents-vetifer-oil","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=23391","title":{"rendered":"The chemistry of scents:  Vetifer oil."},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"23391\">\n<p>I have occasionally covered the topic of colours here, such as those of <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=19723\">flowers<\/a> and <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=3604\">minerals<\/a>, since it is at least possible to illustrate these using <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/337px-Lapis_lazuli_block.jpg\">photographs<\/a> or <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/03\/colour-table.jpg\">colour charts<\/a> to illustrate the theme. But when Derek Lowe took a break from his remarkable coverage of the <a href=\"https:\/\/blogs.sciencemag.org\/pipeline\/\">COVID pandemic<\/a> to highlight a recent article on the active smelling principle in Vetifer oil<span id=\"cite_ITEM-23391-0\" name=\"citation\"><a href=\"#ITEM-23391-0\">[1]<\/a><\/span> I could not resist adding a tiny amount to his must-read story.<\/p>\n<p>It would be great to illustrate this with an example of the scent, but <a href=\"https:\/\/en.wikipedia.org\/wiki\/Digital_scent_technology\">digital scent technology<\/a> has not yet taken off to the point of delivering these to the home.<sup>\u2021\u00a0<\/sup> So we will have to make do with a 3D model of the most active ingredient in Vetifer oil, which is species <strong>10<\/strong> in the scheme below<span id=\"cite_ITEM-23391-0\" name=\"citation\"><a href=\"#ITEM-23391-0\">[1]<\/a><\/span> <a href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.1002anie.202014609.jpg\"><img decoding=\"async\" class=\"aligncenter size-full wp-image-23393\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.1002anie.202014609.jpg\" alt=\"\" width=\"540\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.1002anie.202014609.jpg 1330w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.1002anie.202014609-300x300.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.1002anie.202014609-1024x1024.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.1002anie.202014609-150x150.jpg 150w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.1002anie.202014609-768x768.jpg 768w\" sizes=\"(max-width: 1330px) 100vw, 1330px\" \/><\/a><\/p>\n<p>But first a bit of history. <a href=\"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=3507\" target=\"_blank\" rel=\"noopener\">I wrote<\/a> about one of my chemical heroes William Perkin, whose factory first produced synthetic dyes in quantities that reduced the cost of colourful fabrics<sup>\u2665<\/sup> to the point of affordability by most people. Less well known is that when he retired from running his factory, he devoted much of the rest of his life to experimenting in his home laboratory, where he discovered a simple and cheap synthesis of <a href=\"https:\/\/en.wikipedia.org\/wiki\/Coumarin\" target=\"_blank\" rel=\"noopener\">coumarin<\/a>. This substance is an essential component of the so-called <i><b>foug\u00e8re<\/b><\/i> genre of perfume and as with his discovery of synthetic dyes, the introduction of synthetic coumarin was to revolutionise the scent industry (although in this case, for other reasons, synthetic components did not reduce the price of perfumes as much as they did that of colourful clothes).<\/p>\n<p>If you read Derek&#8217;s blog on the topic and peruse the diagram above, you will appreciate that Vetifer grass is the source of many <a href=\"https:\/\/en.wikipedia.org\/wiki\/Chrysopogon_zizanioides#Essential_oil\">essential oils<\/a> and forms the basis of more than \u2153 of all fragrances. So, like Perkin, to have a synthesis of the most odiferous component, species <strong>10<\/strong> above, is a major breakthrough and one can only wonder whether new entirely synthetic variants might produce entirely new perfumes! As with flowers, changing a methyl group here or a stereochemistry there can have profound effects on the resulting properties!<\/p>\n<div id=\"attachment_23395\" style=\"width: 310px\" class=\"wp-caption aligncenter\"><img decoding=\"async\" aria-describedby=\"caption-attachment-23395\" onclick=\"jmolApplet([450,450],'load wp-content\/uploads\/2021\/02\/10.mol;','c1');\" class=\"size-large wp-image-23395\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10-749x1024.jpg\" alt=\"\" width=\"300\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10-749x1024.jpg 749w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10-219x300.jpg 219w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10-768x1050.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10-1123x1536.jpg 1123w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/02\/10.jpg 1183w\" sizes=\"(max-width: 749px) 100vw, 749px\" \/><p id=\"caption-attachment-23395\" class=\"wp-caption-text\">2-epi-ziza-6(13)-en-3-one. Click for 3D model<\/p><\/div>\n<p>The absolute configuration of <strong>10<\/strong> is not in doubt in any way, but it was done indirectly <em>via<\/em> another compound. As as an additional check (and because it is very quick to do) I add here the calculated optical rotation (at 589nm; a \u03c9B97XD\/Def2-TZVPP\/SCRF=chloroform calculation) as being +106\u00b0. The measured value is +132\u00b0 which is considered reasonably good agreement and certainly confirms the absolute configuration. For good measure, the calculated <sup>13<\/sup>C spectrum (mpw1pw91\/aug-cc-pVDZ\/SCRF=choroform calculation) also matches that reported (For FAIR data of this analysis, see <a href=\"https:\/\/doi.org\/10.14469\/hpc\/7965\">10.14469\/hpc\/7965<\/a>).<\/p>\n<p>So as I noted, its a shame that the scent of <b>10<\/b> cannot be delivered here. But perhaps there would be health and safety issues if that were to be possible!<\/p>\n<hr \/>\n<p><sup>\u2021<\/sup>Around 1993 I was interested in how information about digital scents might be delivered to computers using the Media (or MIME) standard and went as far as informally proposing it be added to the seven existing primary Media types. Rather too tongue-in-cheek I fear, and as far as I know, no olefactory media type has been added to this day!  However, an article relating to all of this has recently appeared.<span id=\"cite_ITEM-23391-1\" name=\"citation\"><a href=\"#ITEM-23391-1\">[2]<\/a><\/span> <sup>\u2665<\/sup> The <a href=\"https:\/\/www.thejohnbrightcollection.co.uk\">John Bright<\/a> collection illustrates the colourful aspects of clothes over the ages. Colours were not absent during <i>e.g.<\/i> the Victorian era as the collection shows, but one may presume that they were also not affordable by most of the population. In the same manner that in earlier times, eg Tyrian Purple was available only to Roman Emperors and other elites.<\/p>\n<h2>References<\/h2>\n    <ol class=\"kcite-bibliography csl-bib-body\"><li id=\"ITEM-23391-0\">J. Ouyang, H. Bae, S. Jordi, Q.M. Dao, S. Dossenbach, S. Dehn, J.B. Lingnau, C. Kanta De, P. Kraft, and B. List, \"The Smelling Principle of Vetiver Oil, Unveiled by Chemical Synthesis\", <i>Angewandte Chemie International Edition<\/i>, vol. 60, pp. 5666-5672, 2021. <a href=\"https:\/\/doi.org\/10.1002\/anie.202014609\">https:\/\/doi.org\/10.1002\/anie.202014609<\/a>\n\n<\/li>\n<li id=\"ITEM-23391-1\">A.B. Wiltschko, \"Building an interdisciplinary team set on bringing the sense of smell to computers\", <i>iScience<\/i>, vol. 24, pp. 102136, 2021. <a href=\"https:\/\/doi.org\/10.1016\/j.isci.2021.102136\">https:\/\/doi.org\/10.1016\/j.isci.2021.102136<\/a>\n\n<\/li>\n<\/ol>\n\n<\/div> <!-- kcite-section 23391 -->","protected":false},"excerpt":{"rendered":"<p>I have occasionally covered the topic of colours here, such as those of flowers and minerals, since it is at least possible to illustrate these using photographs or colour charts to illustrate the theme. But when Derek Lowe took a break from his remarkable coverage of the COVID pandemic to highlight a recent article on [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[1],"tags":[],"ppma_author":[2661],"class_list":["post-23391","post","type-post","status-publish","format-standard","hentry","category-general"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.3 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>The chemistry of scents: Vetifer oil. - Henry Rzepa&#039;s Blog<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=23391\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"The chemistry of scents: Vetifer oil. - Henry Rzepa&#039;s Blog\" \/>\n<meta property=\"og:description\" content=\"I have occasionally covered the topic of colours here, such as those of flowers and minerals, since it is at least possible to illustrate these using photographs or colour charts to illustrate the theme. 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In fact this year's overall theme is certainly large molecules, the one exception being a smaller molecule with a quadruple bond to boron, a theme\u2026","rel":"","context":"In &quot;Interesting chemistry&quot;","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=4"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/12\/51-L1-CuLu.jpg?resize=350%2C200&ssl=1","width":350,"height":200},"classes":[]},{"id":22971,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=22971","url_meta":{"origin":23391,"position":1},"title":"A new example of a quadruple bond from carbon &#8211; to Fe.","author":"Henry Rzepa","date":"November 7, 2020","format":false,"excerpt":"Way back in 2010, I was writing about an experience I had just had during an organic chemistry tutorial, which morphed into speculation as to whether a carbon atom might sustain a quadruple bond to nitrogen. A decade on, and possibly approaching 100 articles by many authors on the topic,\u2026","rel":"","context":"In &quot;Interesting chemistry&quot;","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=4"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/11\/NMn_33a-1024x839.jpg?resize=350%2C200&ssl=1","width":350,"height":200},"classes":[]},{"id":28367,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=28367","url_meta":{"origin":23391,"position":2},"title":"Referencing and citing a science-based blog post.","author":"Henry Rzepa","date":"April 8, 2025","format":false,"excerpt":"Back in early 2012, I pondered about the relationships between a science-based blog post and a science-based journal article. This was in part induced by my discovering a blog plugin called Kcite, which allow a journal articles to be appended to the blog in the form of a numbered reference\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":24067,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=24067","url_meta":{"origin":23391,"position":3},"title":"Dimerisation of cyclopropenylidene: what are the correct &#8220;curly arrows&#8221; for this process?","author":"Henry Rzepa","date":"July 21, 2021","format":false,"excerpt":"In another post, a discussion arose about whether it might be possible to trap\u00a0cyclopropenylidene to form a small molecule with a large dipole moment. Doing so assumes that cyclopropenylidene has a sufficiently long lifetime to so react, before it does so with itself to e.g. dimerise. That dimerisation has an\u2026","rel":"","context":"In &quot;Curly arrows&quot;","block_context":{"text":"Curly arrows","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2327"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":12539,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=12539","url_meta":{"origin":23391,"position":4},"title":"An original chemistry lab from the early 19th century.","author":"Henry Rzepa","date":"May 18, 2014","format":false,"excerpt":"Not a computer in sight! I refer to a chemistry lab from the 1800s I was recently taken to, where famous french chemists such as Joseph Gay-Lussac, Michel Chevreul and Edmond Fremy were professors. Although not used for chemistry any more, it is an incredible treasure trove of objects. Here\u2026","rel":"","context":"In &quot;Historical&quot;","block_context":{"text":"Historical","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=565"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":26147,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=26147","url_meta":{"origin":23391,"position":5},"title":"Diberyllocene &#8212; and Lithioborocene?","author":"Henry Rzepa","date":"June 18, 2023","format":false,"excerpt":"Sometimes, the properties of a molecule are predicted long before it is synthesised. One such is diberyllocene. I first encountered a related molecule, beryllocene itself, many moons ago. This was unusual because unlike the original metallocenes, the metal atom was not symmetrically disposed between the two cyclopentadienyl faces. Now diberyllocene\u2026","rel":"","context":"Similar post","block_context":{"text":"Similar post","link":""},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2023\/06\/Screenshot-21-1024x596.jpg?resize=350%2C200&ssl=1","width":350,"height":200},"classes":[]}],"jetpack_likes_enabled":false,"authors":[{"term_id":2661,"user_id":1,"is_guest":0,"slug":"admin","display_name":"Henry Rzepa","avatar_url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","0":null,"1":"","2":"","3":"","4":"","5":"","6":"","7":"","8":""}],"_links":{"self":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/23391","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=23391"}],"version-history":[{"count":9,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/23391\/revisions"}],"predecessor-version":[{"id":23433,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/23391\/revisions\/23433"}],"wp:attachment":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=23391"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=23391"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=23391"},{"taxonomy":"author","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fppma_author&post=23391"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}