{"id":22656,"date":"2020-09-02T14:18:45","date_gmt":"2020-09-02T13:18:45","guid":{"rendered":"https:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=22656"},"modified":"2020-09-04T10:32:08","modified_gmt":"2020-09-04T09:32:08","slug":"high-performance-polythioesters-with-high-chemical-recyclability","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=22656","title":{"rendered":"High-performance polythioesters with high chemical recyclability."},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"22656\">\n<p>Here I investigate a recent report<span id=\"cite_ITEM-22656-0\" name=\"citation\"><a href=\"#ITEM-22656-0\">[1]<\/a><\/span> of a new generation of polyesters with the intrinsic properties of high crystallinity and chemical recyclability. The latter point is key, since many current plastics <strong>cannot<\/strong> be easily recycled to a form which can be used to regenerate the original polymer with high yield. Here I show some aspects of this fascinating new type of polymer.<\/p>\n<p><a href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/PBTL.svg\"><img decoding=\"async\" class=\"aligncenter size-large wp-image-22658\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/PBTL.svg\" alt=\"\" width=\"540\" \/><\/a><\/p>\n<p>The starting monomer is<strong> 2-thiabicyclo[2.2.1]heptan-3-one<\/strong>, which is easily prepared on a 50g scale. When polymerised with the organocatalyst <strong>IMES<\/strong>\u00a0(below) it produces a stereoregular threodisyndiotactic polymer of the structure shown above. Various other catalysts produced different stereochemistries.<a href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/IMES.svg\"><img decoding=\"async\" class=\"aligncenter size-large wp-image-22660\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/IMES.svg\" alt=\"\" width=\"250\" \/><\/a><\/p>\n<p>The <sup>13<\/sup>C NMR spectrum of the IMES-catalysed polymer showed just a single <sup>13<\/sup>C carbonyl resonance, and the stereochemical assignment was based in part on DFT geometry optimisation calculations and then obtaining relative free energies of a model dimeric molecule, capped as a methyl ester rather than a benzyl ester. These showed that the (<strong><em>R,S,S,R<\/em><\/strong>) stereoisomer was lower than the next lowest by ~1.3 kcal\/mol (Figure below). These calculations were done using a DFT procedure (BP86)\u00a0that does not include dispersion corrections and so I could not but help wonder whether the conformational analysis was entirely reliable, especially if it is to be used to &#8220;tentatively&#8221; assign stereochemistry (the authors&#8217; own description, Figure 3 below) to the pure stereopolymer <strong>B<\/strong>.<\/p>\n<p><a href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/1-8.jpg\"><img decoding=\"async\" class=\"aligncenter size-large wp-image-22663\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/1-8-1024x756.jpg\" alt=\"\" width=\"540\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/1-8-1024x756.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/1-8-300x222.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/1-8-768x567.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/1-8-1536x1135.jpg 1536w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/1-8-2048x1513.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/a><\/p>\n<p>I thought I might make my own very quick investigation of the conformation of these quite flexible monomers. I proceeded as follows:<\/p>\n<ol>\n<li>I drew the molecule as a tetramer as shown above, for the (<strong><em>R,S,S,R<\/em><\/strong>) stereoisomer and saved the coordinates as a molfile. This adds approximate three dimensionality based on the hashes and wedges. I used a tetramer to give it sufficient size to coil around on itself if it wanted to; a dimer is a little too small to do this.<\/li>\n<li>This is then fed to a program which can refine such approximate structures using molecular mechanics (the MMFF94s force field, which intrinsically includes attractive dispersion terms). In this instance, I used Avogadro, producing a more accurate 3D model of the system.<\/li>\n<li>This was then subjected to semi-systematic conformer searching using Avogadro. The lowest energy of <strong>27<\/strong> conformations found was then taken forward for optimisation using quantum mechanical procedures.<\/li>\n<li>The first of these used PM7, a rapid semi-empirical procedure that includes the 3rd generation Grimme dispersion correction.<\/li>\n<li>This was then subjected to B3LYP+GD3BJ\/Def2-SVP final refinement (again a procedure that includes a modified GD3 dispersion term with BJ damping).<sup>&Dagger;<\/sup><\/li>\n<\/ol>\n<p>The original dimer model reported in the supporting information for the article as stereoisomer <strong>1<\/strong> is shown below next to the tetramer optimised using the procedure described above.<\/p>\n<p><div id=\"attachment_22668\" style=\"width: 460px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-22668\" class=\"size-large wp-image-22668\" onclick=\"jmolApplet([450,450],'load wp-content\/uploads\/2020\/09\/RSSR1.mol;spin 3;','c1');\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-lit-1024x759.jpg\" alt=\"\" width=\"450\" height=\"334\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-lit-1024x759.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-lit-300x222.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-lit-768x569.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-lit.jpg 1205w\" sizes=\"auto, (max-width: 450px) 100vw, 450px\" \/><p id=\"caption-attachment-22668\" class=\"wp-caption-text\">Conformation of literature stereoisomer 1, (<strong><em>R,S,S,R<\/em><\/strong>). Click to show 3D rotatable mode<\/p><\/div> <div id=\"attachment_22669\" style=\"width: 460px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-22669\" onclick=\"jmolApplet([450,450],'load wp-content\/uploads\/2020\/09\/RSSRDFT1.mol;spin 5;','c2');\" class=\"size-large wp-image-22669\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-B3LYP-944x1024.jpg\" alt=\"\" width=\"450\" height=\"488\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-B3LYP-944x1024.jpg 944w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-B3LYP-276x300.jpg 276w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-B3LYP-768x833.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSR-B3LYP.jpg 1385w\" sizes=\"auto, (max-width: 450px) 100vw, 450px\" \/><p id=\"caption-attachment-22669\" class=\"wp-caption-text\">Conformation of 1 as obtained by the procedures above on the tetramer. Click to show 3D rotatable model.<\/p><\/div><\/p>\n<div id=\"attachment_22692\" style=\"width: 460px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-22692\" onclick=\"jmolApplet([450,450],'load wp-content\/uploads\/2020\/09\/RSSRDFT4.mol;spin 5;','c3');\" src=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSRDFT4-1024x810.jpg\" alt=\"\" width=\"450\" height=\"356\" class=\"size-large wp-image-22692\" srcset=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSRDFT4-1024x810.jpg 1024w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSRDFT4-300x237.jpg 300w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSRDFT4-768x608.jpg 768w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSRDFT4-1536x1216.jpg 1536w, https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2020\/09\/RSSRDFT4-2048x1621.jpg 2048w\" sizes=\"auto, (max-width: 450px) 100vw, 450px\" \/><p id=\"caption-attachment-22692\" class=\"wp-caption-text\">Conformer 5.1 kcal\/mol lower in free  energy<\/p><\/div>\n<p>You can explore both conformations yourself by clicking on the images above to get a 3D rotatable model. They do look rather different, in that the tetramer is wound back upon itself (a sort of hairpin looping), encouraged by the face of the phenyl group which accepts a 5-ring by dispersion attractions. The tentative assignment<span id=\"cite_ITEM-22656-0\" name=\"citation\"><a href=\"#ITEM-22656-0\">[1]<\/a><\/span> that the (R,S,S,R) stereochemistry corresponds to that of the pure polymer B produced using the IMES catalyst must probably be just that, tentative. No doubt crystallography will verify this in due course.<\/p>\n<p>We see here a possible glimpse of the future of plastics, whereby highly recyclable polymers can be produced that recover the original monomer with very little loss. All that is needed now is that the plastic is efficiently recycled and not just dumped into the oceans!<\/p>\n<hr \/>\n<p><sup>&Dagger;<\/sup> Data at DOI: <a href=\"https:\/\/doi.org\/10.14469\/hpc\/7375\">10.14469\/hpc\/7375<\/a><\/p>\n<h2>References<\/h2>\n    <ol class=\"kcite-bibliography csl-bib-body\"><li id=\"ITEM-22656-0\">C. Shi, M.L. McGraw, Z. Li, L. Cavallo, L. Falivene, and E.Y. Chen, \"High-performance pan-tactic polythioesters with intrinsic crystallinity and chemical recyclability\", <i>Science Advances<\/i>, vol. 6, 2020. <a href=\"https:\/\/doi.org\/10.1126\/sciadv.abc0495\">https:\/\/doi.org\/10.1126\/sciadv.abc0495<\/a>\n\n<\/li>\n<\/ol>\n\n<\/div> <!-- kcite-section 22656 -->","protected":false},"excerpt":{"rendered":"<p>Here I investigate a recent report of a new generation of polyesters with the intrinsic properties of high crystallinity and chemical recyclability. The latter point is key, since many current plastics cannot be easily recycled to a form which can be used to regenerate the original polymer with high yield. Here I show some aspects [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2},"jetpack_post_was_ever_published":false},"categories":[4],"tags":[],"ppma_author":[2661],"class_list":["post-22656","post","type-post","status-publish","format-standard","hentry","category-interesting-chemistry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.6 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>High-performance polythioesters with high chemical recyclability. - Henry Rzepa&#039;s Blog<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=22656\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"High-performance polythioesters with high chemical recyclability. - Henry Rzepa&#039;s Blog\" \/>\n<meta property=\"og:description\" content=\"Here I investigate a recent report of a new generation of polyesters with the intrinsic properties of high crystallinity and chemical recyclability. The latter point is key, since many current plastics cannot be easily recycled to a form which can be used to regenerate the original polymer with high yield. 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Lactide can be turned into polymers with remarkable properties, which in turn degrade down easily back to lactic acid. A perfect bio-renewable material! The starting point\u2026","rel":"","context":"In &quot;General&quot;","block_context":{"text":"General","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=1"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/07\/lactide.jpg?resize=350%2C200","width":350,"height":200},"classes":[]},{"id":3492,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3492","url_meta":{"origin":22656,"position":1},"title":"Valentine chemistry","author":"Henry Rzepa","date":"February 13, 2011","format":false,"excerpt":"The M\u00f6bius band is an experimental delight. In its original forms, it came flat-packed as below. The one shown on the left is related to the international symbol for recycling (if we denote the number of half twists imparted as m, this one has m=3). The middle one (m=4) shows\u2026","rel":"","context":"In &quot;General&quot;","block_context":{"text":"General","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=1"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/02\/higher_twist-1.jpg?resize=350%2C200","width":350,"height":200},"classes":[]},{"id":16251,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=16251","url_meta":{"origin":22656,"position":2},"title":"Metametadata: data about data about (chemical) data.","author":"Henry Rzepa","date":"April 16, 2016","format":false,"excerpt":"Scientists are familiar with the term data, at least in a scientific or chemical context, but appreciating metadata (meaning \"after\", or \"beyond\") is slightly more subtle, in the sense of using it to mean data about data. The challenge lies in clarifying where the boundary between data and its metadata\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":17951,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=17951","url_meta":{"origin":22656,"position":3},"title":"Supporting information: chemical graveyard or invaluable resource for chemical structures.","author":"Henry Rzepa","date":"March 31, 2017","format":false,"excerpt":"Nowadays, data supporting\u00a0most publications relating to the synthesis of organic compounds is more likely than not to be found in associated \"supporting information\" rather than the (often page limited) article itself. For example, this article has an SI which is paginated at 907; almost a mini-database in its own right!\u2020\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":24348,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=24348","url_meta":{"origin":22656,"position":4},"title":"Herapathite: an example of (double?) serendipity.","author":"Henry Rzepa","date":"October 14, 2021","format":false,"excerpt":"On October 13, 2021, the historical group of the Royal Society of Chemistry organised a symposium celebrating ~150 years of the history of (molecular) chirality. We met for the first time in person for more than 18 months and were treated to a splendid and diverse program about the subject.\u2026","rel":"","context":"In &quot;Chiroptics&quot;","block_context":{"text":"Chiroptics","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2644"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/10\/NAIACE.jpg?resize=350%2C200&ssl=1","width":350,"height":200},"classes":[]},{"id":439,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=439","url_meta":{"origin":22656,"position":5},"title":"The mystery of the  Finkelstein reaction","author":"Henry Rzepa","date":"May 16, 2009","format":false,"excerpt":"This story starts with an organic chemistry tutorial, when a student asked for clarification of the \u00a0Finkelstein reaction. This is a simple SN2 type displacement of an alkyl chloride or bromide, using sodium iodide in acetone solution, and resulting in an alkyl iodide. What was the driving force for this\u2026","rel":"","context":"In &quot;Interesting chemistry&quot;","block_context":{"text":"Interesting chemistry","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=4"},"img":{"alt_text":"(Acetone)3. NaI","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2009\/05\/acetonenai.jpg?resize=350%2C200","width":350,"height":200},"classes":[]}],"jetpack_likes_enabled":false,"authors":[{"term_id":2661,"user_id":1,"is_guest":0,"slug":"admin","display_name":"Henry Rzepa","avatar_url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","0":null,"1":"","2":"","3":"","4":"","5":"","6":"","7":"","8":""}],"_links":{"self":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/22656","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=22656"}],"version-history":[{"count":25,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/22656\/revisions"}],"predecessor-version":[{"id":22693,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/22656\/revisions\/22693"}],"wp:attachment":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=22656"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=22656"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=22656"},{"taxonomy":"author","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fppma_author&post=22656"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}