{"id":1930,"date":"2010-04-18T14:45:21","date_gmt":"2010-04-18T13:45:21","guid":{"rendered":"http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930"},"modified":"2010-07-26T08:22:02","modified_gmt":"2010-07-26T07:22:02","slug":"webcite","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930","title":{"rendered":"WebCite and Jmol"},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"1930\">\n<p style=\"text-align: left;\">Since I have gotten into the habit of quoting some of my posts in other contexts,  I have started to also archive them using <a href=\"http:\/\/www.webcitation.org\/archive.php\" target=\"_blank\">WebCite<\/a>. One can quote the resulting archive as:<\/p>\n<p style=\"text-align: left;\">Rzepa, Henry. Quintuple bonds. \u00a02010-04-18. URL:http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1722. Accessed: 2010-04-18.\u00a0<a href=\"http:\/\/www.webcitation.org\/5p5BtuzSH\" target=\"webcite\">(Archived by WebCite<sup>\u00ae<\/sup> at http:\/\/www.webcitation.org\/5p5BtuzSH)<\/a><\/p>\n<p style=\"text-align: left;\">There is one issue though. \u00a0Many of my posts expose molecules via a \u00a0Jmol popup. \u00a0WebCite cannot archive that aspect; the Jmol applet fails to run (it would be surprising, since WebCite would have to archive a local copy of \u00a0Jmol to create a new sandbox). Anyone got any thoughts?<\/p>\n<!-- kcite active, but no citations found -->\n<\/div> <!-- kcite-section 1930 -->","protected":false},"excerpt":{"rendered":"<p>Since I have gotten into the habit of quoting some of my posts in other contexts, I have started to also archive them using WebCite. One can quote the resulting archive as: Rzepa, Henry. Quintuple bonds. \u00a02010-04-18. URL:http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1722. Accessed: 2010-04-18.\u00a0(Archived by WebCite\u00ae at http:\/\/www.webcitation.org\/5p5BtuzSH) There is one issue though. \u00a0Many of my posts expose molecules [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":false,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[2],"tags":[267,2647,6,266],"ppma_author":[2661],"class_list":["post-1930","post","type-post","status-publish","format-standard","hentry","category-chemical-it","tag-archiving","tag-chemical-it","tag-jmol","tag-webcite"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.5 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>WebCite and Jmol - Henry Rzepa&#039;s Blog<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"WebCite and Jmol - Henry Rzepa&#039;s Blog\" \/>\n<meta property=\"og:description\" content=\"Since I have gotten into the habit of quoting some of my posts in other contexts, I have started to also archive them using WebCite. One can quote the resulting archive as: Rzepa, Henry. Quintuple bonds. \u00a02010-04-18. URL:http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1722. Accessed: 2010-04-18.\u00a0(Archived by WebCite\u00ae at http:\/\/www.webcitation.org\/5p5BtuzSH) There is one issue though. \u00a0Many of my posts expose molecules [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930\" \/>\n<meta property=\"og:site_name\" content=\"Henry Rzepa&#039;s Blog\" \/>\n<meta property=\"article:published_time\" content=\"2010-04-18T13:45:21+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2010-07-26T07:22:02+00:00\" \/>\n<meta name=\"author\" content=\"Henry Rzepa\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"Henry Rzepa\" \/>\n\t<meta name=\"twitter:label2\" content=\"Estimated reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"1 minute\" \/>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"WebCite and Jmol - Henry Rzepa&#039;s Blog","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930","og_locale":"en_GB","og_type":"article","og_title":"WebCite and Jmol - Henry Rzepa&#039;s Blog","og_description":"Since I have gotten into the habit of quoting some of my posts in other contexts, I have started to also archive them using WebCite. One can quote the resulting archive as: Rzepa, Henry. Quintuple bonds. \u00a02010-04-18. URL:http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1722. Accessed: 2010-04-18.\u00a0(Archived by WebCite\u00ae at http:\/\/www.webcitation.org\/5p5BtuzSH) There is one issue though. \u00a0Many of my posts expose molecules [&hellip;]","og_url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930","og_site_name":"Henry Rzepa&#039;s Blog","article_published_time":"2010-04-18T13:45:21+00:00","article_modified_time":"2010-07-26T07:22:02+00:00","author":"Henry Rzepa","twitter_card":"summary_large_image","twitter_misc":{"Written by":"Henry Rzepa","Estimated reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"Article","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930#article","isPartOf":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930"},"author":{"name":"Henry Rzepa","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#\/schema\/person\/2b40f7b9c872a4dc1547e040a11b6281"},"headline":"WebCite and Jmol","datePublished":"2010-04-18T13:45:21+00:00","dateModified":"2010-07-26T07:22:02+00:00","mainEntityOfPage":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930"},"wordCount":114,"commentCount":0,"keywords":["archiving","Chemical IT","jmol","Webcite"],"articleSection":["Chemical IT"],"inLanguage":"en-GB","potentialAction":[{"@type":"CommentAction","name":"Comment","target":["https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930#respond"]}]},{"@type":"WebPage","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930","url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930","name":"WebCite and Jmol - Henry Rzepa&#039;s Blog","isPartOf":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#website"},"datePublished":"2010-04-18T13:45:21+00:00","dateModified":"2010-07-26T07:22:02+00:00","author":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#\/schema\/person\/2b40f7b9c872a4dc1547e040a11b6281"},"breadcrumb":{"@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930#breadcrumb"},"inLanguage":"en-GB","potentialAction":[{"@type":"ReadAction","target":["https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1930#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog"},{"@type":"ListItem","position":2,"name":"WebCite and Jmol"}]},{"@type":"WebSite","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#website","url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/","name":"Henry Rzepa&#039;s Blog","description":"Chemistry with a twist","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-GB"},{"@type":"Person","@id":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/#\/schema\/person\/2b40f7b9c872a4dc1547e040a11b6281","name":"Henry Rzepa","image":{"@type":"ImageObject","inLanguage":"en-GB","@id":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g370be3a7397865e4fd161aefeb0a5a85","url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","contentUrl":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","caption":"Henry Rzepa"},"description":"Henry Rzepa is Emeritus Professor of Computational Chemistry at Imperial College London.","sameAs":["https:\/\/orcid.org\/0000-0002-8635-8390"],"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?author=1"}]}},"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/sDef7-webcite","jetpack-related-posts":[{"id":8,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=8","url_meta":{"origin":1930,"position":0},"title":"Jmol and WordPress: Loading 3D molecular models, molecular isosurfaces and molecular vibrations into a blog","author":"Henry Rzepa","date":"April 12, 2008","format":false,"excerpt":"Click on the static image to get an active model. The code used to obtain the above was: <script src=\"..\/Jmol\/Jmol.js\" type=\"text\/javascript\" \/> This line is best added to the theme header by editing the file \/wp-content\/themes\/default\/header.php to add the following line in the header: <script src=\"..\/Jmol\/Jmol.js\" type=\"text\/javascript\"><\/script> <img onclick=\"jmolInitialize('..\/Jmol\/','JmolAppletSigned.jar');jmolSetAppletColor('yellow'); jmolApplet([450,450],'load\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2021\/07\/a80.jpg?resize=350%2C200&ssl=1","width":350,"height":200},"classes":[]},{"id":11895,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=11895","url_meta":{"origin":1930,"position":1},"title":"3D-rendered molecular models on this blog: an update.","author":"Henry Rzepa","date":"January 16, 2014","format":false,"excerpt":"So much to do, so little time to do it. That is my excuse at least. Right from my first post on this blog in 2008\u00a0I have tried to enhance it using Jmol, a Java-based applet (normally indicated with the caption Click for 3D). This has been pretty stable for\u2026","rel":"","context":"In &quot;General&quot;","block_context":{"text":"General","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=1"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":12607,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=12607","url_meta":{"origin":1930,"position":2},"title":"Test of JSmol in WordPress: the background story.","author":"Henry Rzepa","date":"June 8, 2014","format":false,"excerpt":"A word of explanation about this test page for experimenting with JSmol. Many moons ago I posted about how to include a generated 3D molecular model in a blog post, and have used that method on many posts here ever since. It relied on Java as the underlying software (first\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":5881,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=5881","url_meta":{"origin":1930,"position":3},"title":"Mobile-friendly solutions for viewing (WordPress) Blogs with embedded  3D molecular coordinates.","author":"Henry Rzepa","date":"December 11, 2011","format":false,"excerpt":"My very first post on this blog, in 2008, was to describe how Jmol could be used to illustrate chemical themes by adding 3D models to posts. Many of my subsequent efforts have indeed invoked Jmol. I thought I might review progress since then, with a particular focus on using\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":2084,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=2084","url_meta":{"origin":1930,"position":4},"title":"Chemistry with a super-twist: A molecular trefoil knot, part 2.","author":"Henry Rzepa","date":"June 1, 2010","format":false,"excerpt":"A conjugated, (apparently) aromatic molecular trefoil might be expected to have some unusual, if not extreme properties. Here some of these are explored. The first is the vibrational spectrum. With 144 atoms for this molecule, it has 426 vibrational modes, but one is highlighted below. 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