{"id":16391,"date":"2016-05-24T08:43:30","date_gmt":"2016-05-24T07:43:30","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=16391"},"modified":"2016-06-26T08:23:54","modified_gmt":"2016-06-26T07:23:54","slug":"data-free-research-data-management-not-an-oxymoron","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=16391","title":{"rendered":"Data-free research data management? Not an oxymoron."},"content":{"rendered":"
\n

\n\tI occasionally post about "RDM" (research data management), an activity that has recently become a formalised essential part of the research processes. I say recently formalised, since researchers have of course kept research notebooks recording their activities and their data since the dawn of science, but not always in an open and transparent manner. The desirability of doing so was revealed by the 2009 "Climategate<\/a>" events. In the UK, Climategate was apparently the catalyst which persuaded the funding councils (such as the EPSRC, the Royal Society, etc) to formulate policies which required all their funded researchers to adopt the principles of RDM by May 2015 and in their future researches. An early career researcher here, anxious to conform to the funding body instructions, sent me an email a few days ago asking about one aspect of RDM which got me thinking.\n<\/p>\n

\n\tThe question related to the divide between data as a separate research object (and which therefore has to be managed), and data as an inseparable part of the article narrative, which is of course ostensibly managed by the journal publication processes. Such data may often be the description of a process rather than simply tables of numbers or graphs. In chemistry it may include chemical names and chemical terms as part of an experimental procedure. For one nice illustration of such embedded data, go look at the chemical tagger<\/a> page. Here the data is blending with the semantics, and the two are not easily separated. So, when such separation is not easily achieved, should the specific processes required by RDM as illustrated in the five bullet points below actually be followed?\n<\/p>\n

    \n
  1. \n\t\tSpecify a data management plan to be followed, as for example points 2-5<\/strong> below.\n\t<\/li>\n
  2. \n\t\tDecide upon a location for your data, separated into one for "live" or working data (the purpose simply being to ensure it is properly backed up) and the other for a sub-set of formally "published data" which has to be available for at least ten years after its publication.\n\t<\/li>\n
  3. \n\t\tUse 2<\/strong> to gather metadata (see 6-14 below) and in return get a DOI representing the location of the combined metadata + data, from a suitable registration authority such as DataCite.\n\t<\/li>\n
  4. \n\t\tQuote this DOI(s) in the article describing the results of analysing the data and presenting hypotheses, and conversely once the article itself is allocated its own DOI from a registration authority such as CrossRef, update the metadata in item 3<\/strong> so as to achieve a bidirectional link between the data and its narrative (and we assume that DataCite and CrossRef will also increasingly exchange the metadata they each hold about the items).\n\t<\/li>\n
  5. \n\t\tAdd both the data and the article DOIs to any institutional CRIS or current research information system (parenthetically, I regard this last stipulation as rather redundant if items 3<\/strong> and 4<\/strong> are working effectively, but its a good interim measure whilst the overall system matures).\n\t<\/li>\n<\/ol>\n

    \n\tSo, should step 2<\/strong> be included if the data itself is inextricably intertwined with the narrative and cannot be separated? The slightly surprising advice I would suggest is yes! And the answer is that it IS possible to generate metadata (data about the, possibly entwined, data) which CAN be processed in such a step. What forms would such metadata take?\n<\/p>\n

      \n
    1. \n\t\tIdentification of the researcher(s) involved. This would nowadays take the form of an ORCID (Open Research and Collaborator Identifier).\n\t<\/li>\n
    2. \n\t\tIdentification of the hosting institution where the data has been produced. There is currently no equivalent to an ORCID for institutions, but it is very likely to come in the future.\n\t<\/li>\n
    3. \n\t\tA date stamp formalising when the (meta)data is actually deposited.\n\t<\/li>\n
    4. \n\t\tA title for the project being described. Here we see a blurring between the narrative\/article and the data; a title is the shortest possible description of the narrative\/article, and it may also apply to the data object(s) or it could have its own title.\n\t<\/li>\n
    5. \n\t\tA slightly fuller abstract of the project being described. Here we see further blurring between the narrative and data objects.\n\t<\/li>\n
    6. \n\t\tOne can include "related identifiers", in particular the DOIs of any other relevant articles that might have been published which may expand the context of the data, and also the DOIs of any other relevant datasets which may have been allocated in step 2<\/strong> above.\n\t<\/li>\n
    7. \n\t\tIt is also beneficial to include "chemical identifiers". These can take the form of InChI strings and InChI keys, which allow discretely defined molecular objects which were the object of the research to be tracked and which relate to both the narrative and any other data objects.\n\t<\/li>\n
    8. \n\t\tIf specific software has been used to analyse data, it too can be included as a "related identifier" (e.g. <\/em>[1]<\/a><\/span>\n\t<\/li>\n
    9. \n\t\tPotentially at least, if a well-defined instrument has been involved, it too could be included with its own "related identifier". With both 13-14, other issues may need addressing, such as versioning etc, but this no doubt will be sorted in due course.\n\t<\/li>\n
    10. \n\t\tetc.\n\t<\/li>\n<\/ol>\n

      \n\tSo items such as 6-14<\/strong> can be collected and sent to e.g.<\/em> DataCite with a DOI received in return as part of item 2<\/strong> of the RDM processes. No "pure" data need be involved, only metadata. Nonetheless such metadata can only increase the visibility and discoverability of the research, as illustrated in how such metadata can be searched<\/a> for the components described above.<\/p>\n

      References<\/h2>\n
      1. H.S. Rzepa, \"KINISOT. A basic program to calculate kinetic isotope effects using normal coordinate analysis of transition state and reactants.\", 2015. https:\/\/doi.org\/10.5281\/zenodo.19272<\/a>\n\n<\/li>\n<\/ol>\n\n<\/div> ","protected":false},"excerpt":{"rendered":"

        I occasionally post about "RDM" (research data management), an activity that has recently become a formalised essential part of the research processes. I say recently formalised, since researchers have of course kept research notebooks recording their activities and their data since the dawn of science, but not always in an open and transparent manner. The desirability of doing […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[2],"tags":[1420,1791,1792,1793,1768,1474,1790,1789,1690,1213,1650,926,1653,1686,1691,1405],"ppma_author":[2661],"class_list":["post-16391","post","type-post","status-publish","format-standard","hentry","category-chemical-it","tag-academic-publishing","tag-chemical-identifiers","tag-chemical-names-and-chemical-terms","tag-chemical-tagger-page","tag-crossref","tag-data-management","tag-data-management-plan","tag-datacite","tag-identifiers","tag-orcid","tag-rdm","tag-researcher","tag-royal-society","tag-singular-spectrum-analysis","tag-technical-communication","tag-technologyinternet"],"yoast_head":"\nData-free research data management? 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However, the concept of the embargo seems to be spreading to cover other aspects of publishing, and I came\u2026","rel":"","context":"In "Chemical IT"","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":16628,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=16628","url_meta":{"origin":16391,"position":5},"title":"Managing (open) NMR data: a working example using Mpublish.","author":"Henry Rzepa","date":"August 1, 2016","format":false,"excerpt":"In March, I posted from\u00a0the ACS meeting in San Diego on the topic of Research data: Managing spectroscopy-NMR, and noted a talk by MestreLab Research on\u00a0how a tool called Mpublish in the forthcoming release of their NMR analysis software Mestrenova could help. 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