{"id":1516,"date":"2010-01-17T10:35:00","date_gmt":"2010-01-17T09:35:00","guid":{"rendered":"http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1516"},"modified":"2010-02-24T12:04:27","modified_gmt":"2010-02-24T11:04:27","slug":"semantic-blogs","status":"publish","type":"post","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1516","title":{"rendered":"Semantic Blogs"},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"1516\">\n<p>A Semantic blog is one in which the system at least in part understands about (some of the) concepts and topics that are in the content. The idea is that this content can be more intelligently (is that the correct word?) and importantly, automatically searched, harvested, and connected to the same or similar concepts found elsewhere in other blogs and the Web as whole. I am writing this blog using Firefox, having added a Firefox extension called <a href=\"http:\/\/www.zemanta.com\/\" target=\"_blank\">Zemanta<\/a>. As I write, the system offers suggestions for similar themes elsewhere that I could choose to link to the blog (and obviously the more one writes, or the more specific the terms one uses, the more sensible the suggestions become. At this precise moment, it is still offering fairly generic suggestions, one of which I have just chosen to add). My purpose in this particular post is to explore how the very process of writing a blog might be affected by such a product. I am also inferring (but cannot add detail at the moment) that all the (semantic) connections or links to other materials will be expressed in this blog using some form of formal declaration, such as e.g. RDF or RDFa.<\/p>\n<p>Thus this blog has a WordPress plugin called <a href=\"http:\/\/wordpress.org\/extend\/plugins\/wp-rdfa\/\" target=\"_blank\">wp-RDFa<\/a> as part of its library. This gathers meta-data in two forms, FOAF and Dublin-Core, and expresses it using the <a href=\"http:\/\/www.w3.org\/TR\/xhtml-rdfa-primer\/\" target=\"_blank\">RDFa<\/a> formalism. This is really just a standard way of letting any software that might visit the blog know that this meta-data is available for harvesting. FOAF is something we discussed a year or so back; it is a formal way of expressing information about yourself in RDF (see an <a href=\"http:\/\/www.ch.ic.ac.uk\/rzepa\/talks\/acs08\/\" target=\"_blank\">ACS talk<\/a> on the topic), and in particular indicating what you are interested in (as a chemist in my case), who you collaborate with, where you visit (information of course that you do wish to make public, you do not have to include any private details). Nowadays, a variety of social networking tools have become semantically enabled. This blog is, a flavour of Wikis (<a href=\"http:\/\/semantic-mediawiki.org\/wiki\/Semantic_MediaWiki\" target=\"_blank\">SemediaWiki,<\/a> and its potential as a format for <a href=\"http:\/\/www.ch.ic.ac.uk\/rzepa\/talks\/acs07-cinf\/\" target=\"_blank\">science journals<\/a>), <a href=\"http:\/\/semsl.org\/\" target=\"_blank\">Second Life<\/a> and many others. At the moment, there is little apparent added value emerging from such enrichment (I have just noted another two Zemanta articles flagged, which I will add at this instant) and certainly little in chemistry.<\/p>\n<p>But what could one aspire to? For example, Steve Bachrach on his <a href=\"http:\/\/comporgchem.com\/blog\/\" target=\"_blank\">blog<\/a> routinely adds InChI identifiers and keys to uniquely identify all molecules mentioned on his site. Just imagine a situation where one is describing a molecule in one&#8217;s own blog, and e.g. Zemanta instantly flags up any other article out there which has tagged the same molecule. That article and your blog can now be semantically identified as talking about the same system. A harvester could collect the information about this molecule, and create a superset of information about it (hey, we chemists already have such a system, it is called Chemical Abstracts! But of course its not quite the same, and I had better reserve a comparison with CAS for another post), which in turn enriches resources such as Zemanta. Its a sort of positive feed-back loop!<\/p>\n<p>Well, the Semantic Web has been a long time coming (see DOI: <a href=\"http:\/\/dx.doi.org\/10.1021\/ci000406v\" target=\"_blank\">http:\/\/dx.doi.org\/10.1021\/ci000406v<\/a> or <a href=\"http:\/\/dx.doi.org\/10.1087\/095315101750240421\" target=\"_blank\">10.1087\/095315101750240421<\/a> which were both written in 2001), and since it has not yet changed the Web, some tend to write it off as a lost cause. Perhaps the semantification of blogs will make a difference?<\/p>\n<h6 class=\"zemanta-related-title\" style=\"font-size: 1em;\">Related articles by Zemanta<\/h6>\n<ul class=\"zemanta-article-ul\">\n<li class=\"zemanta-article-ul-li\"><a href=\"http:\/\/thwaits.wordpress.com\/2010\/01\/12\/more-on-zemanta\/\">More on Zemanta<\/a> (thwaits.wordpress.com)<\/li>\n<li class=\"zemanta-article-ul-li\"><a href=\"http:\/\/go-to-hellman.blogspot.com\/2009\/05\/google-rdfa-and-reusing-vocabularies.html\">Google, RDFa, and Reusing Vocabularies<\/a> (go-to-hellman.blogspot.com)<\/li>\n<li class=\"zemanta-article-ul-li\"><a href=\"http:\/\/webr3.org\/blog\/semantic-web\/the-end-of-search-linked-data-semantic-web-and-my-vision\/\">The end of Search? Linked Data, Semantic Web &amp; thoughts.<\/a> (webr3.org)<\/li>\n<\/ul>\n<div class=\"zemanta-pixie\" style=\"margin-top: 10px; height: 15px;\"><a class=\"zemanta-pixie-a\" title=\"Reblog this post [with Zemanta]\" href=\"http:\/\/reblog.zemanta.com\/zemified\/f33a789d-47f8-4a7c-bb09-bb19b869f9ed\/\"><img decoding=\"async\" class=\"zemanta-pixie-img\" style=\"border: medium none; float: right;\" src=\"http:\/\/img.zemanta.com\/reblog_e.png?x-id=f33a789d-47f8-4a7c-bb09-bb19b869f9ed\" alt=\"Reblog this post [with Zemanta]\" \/><\/a><span class=\"zem-script more-related pretty-attribution\"><script src=\"http:\/\/static.zemanta.com\/readside\/loader.js\" type=\"text\/javascript\"><\/script><\/span><\/div>\n<!-- kcite active, but no citations found -->\n<\/div> <!-- kcite-section 1516 -->","protected":false},"excerpt":{"rendered":"<p>A Semantic blog is one in which the system at least in part understands about (some of the) concepts and topics that are in the content. The idea is that this content can be more intelligently (is that the correct word?) and importantly, automatically searched, harvested, and connected to the same or similar concepts found [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":5,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":false,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[2],"tags":[2647,128,192],"ppma_author":[2661],"class_list":["post-1516","post","type-post","status-publish","format-standard","hentry","category-chemical-it","tag-chemical-it","tag-rdf","tag-semantic"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.5 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Semantic Blogs - Henry Rzepa&#039;s Blog<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=1516\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Semantic Blogs - Henry Rzepa&#039;s Blog\" \/>\n<meta property=\"og:description\" content=\"A Semantic blog is one in which the system at least in part understands about (some of the) concepts and topics that are in the content. 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What we are seeking of course is an example of how scientific connections have been made using inference logic from semantically\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/05\/DULSAE.jpg?resize=350%2C200","width":350,"height":200},"classes":[]},{"id":6035,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=6035","url_meta":{"origin":1516,"position":1},"title":"Shared space (in science).","author":"Henry Rzepa","date":"January 6, 2012","format":false,"excerpt":"I thought I would launch the 2012 edition of this blog by writing about shared space. If you have not come across it before, it is (to quote Wikipedia), \"an\u00a0urban design\u00a0concept aimed at integrated use of public spaces.\" The BBC here in the UK ran a feature on it recently,\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/10\/arrow_pushing.jpg?resize=350%2C200","width":350,"height":200},"classes":[]},{"id":3154,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3154","url_meta":{"origin":1516,"position":2},"title":"(re)Use of data from chemical journals.","author":"Henry Rzepa","date":"December 22, 2010","format":false,"excerpt":"If you visit this blog you will see a scientific discourse in action. One of the commentators there notes how they would like to access some data made available in a journal article via the (still quite rare) format of an interactive table, but they are not familiar with how\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/12\/jmol0.jpg?resize=350%2C200","width":350,"height":200},"classes":[]},{"id":5796,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=5796","url_meta":{"origin":1516,"position":3},"title":"Validating the chemical literature heritage. Eudesma-1,3-dien-6,13-olide.","author":"Henry Rzepa","date":"December 8, 2011","format":false,"excerpt":"Previously, I had noted that Corey\u00a0reported\u00a0in 1963\/65 the total synthesis of\u00a0the sesquiterpene dihydrocostunolide. Compound 16, known as\u00a0Eudesma-1,3-dien-6,13-olide was represented as shown below in black; the hydrogen shown in red was implicit in Corey's representation, as was its stereochemistry. As of this instant, this compound is just one of 64,688,893 molecules\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2011\/12\/p34a1.svg","width":350,"height":200},"classes":[]},{"id":7553,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=7553","url_meta":{"origin":1516,"position":4},"title":"Digital repositories. An update to the update.","author":"Henry Rzepa","date":"August 13, 2012","format":false,"excerpt":"A third digital repository has been added to the two I described before. Chempound is a free open-source repository which (unlike DSpace and Figshare) was developed specifically for chemistry. It carries more semantic information (in the form of an RDF triple declaration), which allows SPARQL queries on the entry to\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":19392,"url":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=19392","url_meta":{"origin":1516,"position":5},"title":"First, Open Access, then Open (and FAIR) Data, now Open  Citations.","author":"Henry Rzepa","date":"February 3, 2018","format":false,"excerpt":"The topic of open citations was presented at the PIDapalooza conference and represents a third component in the increasing corpus of open scientific information. David Shotton gave us an update on\u00a0\u00a0Citations as First Class data objects - Citation Identifiers and introduced (me) to the blog where he discusses this topic.\u2026","rel":"","context":"In &quot;Chemical IT&quot;","block_context":{"text":"Chemical IT","link":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?cat=2"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]}],"jetpack_likes_enabled":false,"authors":[{"term_id":2661,"user_id":1,"is_guest":0,"slug":"admin","display_name":"Henry Rzepa","avatar_url":"https:\/\/secure.gravatar.com\/avatar\/897b6740f7f599bca7942cdf7d7914af5988937ae0e3869ab09aebb87f26a731?s=96&d=blank&r=g","0":null,"1":"","2":"","3":"","4":"","5":"","6":"","7":"","8":""}],"_links":{"self":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/1516","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1516"}],"version-history":[{"count":0,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=\/wp\/v2\/posts\/1516\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1516"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1516"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1516"},{"taxonomy":"author","embeddable":true,"href":"https:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fppma_author&post=1516"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}