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<document>

<!-- CML document - simple reaction example - karne@innocent.com - 7/4/00 -->
<!-- file converted from: MDL .mol and JCAMP-DX -->
<!-- contains example of how to markup a simple A + B = C reaction -->
<cml title="Simple Reaction" id="cml_simple" xmlns="x-schema:cml_schema_ie_02.xml">
	<reaction title="Diels-Alder cycloaddition" id="simple_rxn_1" convention="stepwise">
		<string title="description">Simple example of a A + B -> C reaction. See source for further information.</string>
		<float title="yield" units="%">88</float>
		<string title="notes">taken from Vollhardt and Schore</string>
		<list title="reactionStep" id="simple_s_1">
			<string title="description">cycloaddition</string>
			<float title="yield" convention="%">88</float>
			<string title="notes">one step</string>
			<link title="reactant" href="simple_mol_reactant1" id="simple_lk_1"/>
			<link title="reactant" href="simple_mol_reactant2" id="simple_lk_2"/>
			<link title="reagent" id="simple_lk_3">
				<integer title="index">1</integer>
				<string title="solvent">Acetonitrile</string>
				<string title="temperature" convention="degC">100</string>
				<string title="duration" convention="hours">3</string>
				<string title="notes">reflux</string>	
			</link>
			<link title="reagent" id="simple_lk_4">
				<integer title="index">2</integer>
				<string title="notes">workup</string>	
			</link>
			<link title="product" href="simple_mol_product" id="simple_lk_5"/>
			<!-- also catalyst, intermediate, transition state as needed -->	
		</list>
	</reaction>
	<!-- reactants -->
 	<molecule title="2,3-Dimethyl-1,3-butadiene" id="simple_mol_reactant1">
		<formula>C6 H10</formula>
		<!-- atom list -->
		<list title="atoms">
			<atom id="r1_a_1">
				<integer builtin="atomId">1</integer>
				<float builtin="x3" units="A">5.4000</float>
				<float builtin="y3" units="A">-3.4000</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r1_a_2">
				<integer builtin="atomId">2</integer>
				<float builtin="x3" units="A">5.3958</float>
				<float builtin="y3" units="A">-4.2250</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r1_a_3">
				<integer builtin="atomId">3</integer>
				<float builtin="x3" units="A">5.9833</float>
				<float builtin="y3" units="A">-2.8125</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r1_a_4">
				<integer builtin="atomId">4</integer>
				<float builtin="x3" units="A">4.8083</float>
				<float builtin="y3" units="A">-4.8083</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r1_a_5">
				<integer builtin="atomId">5</integer>
				<float builtin="x3" units="A">5.9792</float>
				<float builtin="y3" units="A">-4.8083</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r1_a_6">
				<integer builtin="atomId">6</integer>
				<float builtin="x3" units="A">4.8125</float>
				<float builtin="y3" units="A">-2.8125</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
		</list>
		<list title="bonds">
			<bond id="r1_b_1">
				<integer title="bondId">1</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">2</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="r1_b_2">
				<integer title="bondId">2</integer>
				<integer builtin="atomRef">2</integer>
				<integer builtin="atomRef">4</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="r1_b_3">
				<integer title="bondId">3</integer>
				<integer builtin="atomRef">2</integer>
				<integer builtin="atomRef">5</integer>
				<integer builtin="order" convention="MDL">2</integer>
			</bond>
			<bond id="r1_b_4">
				<integer title="bondId">4</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">3</integer>
				<integer builtin="order" convention="MDL">2</integer>
			</bond>
			<bond id="r1_b_5">
				<integer title="bondId">5</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">6</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
		</list>
	</molecule>
	<molecule title="Propenal" id="simple_mol_reactant2">
		<formula>C3 H4 O</formula>
		<!-- atom list -->
		<list title="atoms">
			<atom id="r2_a_1">
				<integer builtin="atomId">1</integer>
				<float builtin="x3" units="A">0.9083</float>
				<float builtin="y3" units="A">-1.3750</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r2_a_2">
				<integer builtin="atomId">2</integer>
				<float builtin="x3" units="A">0.9042</float>
				<float builtin="y3" units="A">-2.2000</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r2_a_3">
				<integer builtin="atomId">3</integer>
				<float builtin="x3" units="A">0.3208</float>
				<float builtin="y3" units="A">-0.7875</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">H</string>
			</atom>
			<atom id="r2_a_4">
				<integer builtin="atomId">4</integer>
				<float builtin="x3" units="A">1.4917</float>
				<float builtin="y3" units="A">-0.7875</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="r2_a_5">
				<integer builtin="atomId">5</integer>
				<float builtin="x3" units="A">1.4875</float>
				<float builtin="y3" units="A">0.0375</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">O</string>
			</atom>
		</list>
		<list title="bonds">
			<bond id="r2_b_1">
				<integer title="bondId">1</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">3</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="r2_b_2">
				<integer title="bondId">2</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">2</integer>
				<integer builtin="order" convention="MDL">2</integer>
			</bond>
			<bond id="r2_b_3">
				<integer title="bondId">3</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">4</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="r2_b_4">
				<integer title="bondId">4</integer>
				<integer builtin="atomRef">4</integer>
				<integer builtin="atomRef">5</integer>
				<integer builtin="order" convention="MDL">2</integer>
			</bond>
		</list>
	</molecule>
	<!-- reagents -->
	<!-- products -->
	<molecule title="Diels-Alder adduct" id="simple_mol_product">
		<formula>C9 H14 O</formula>
		<!-- atom list -->
		<list title="atoms">
			<atom id="p_a_1">
				<integer builtin="atomId">1</integer>
				<float builtin="x3" units="A">4.0375</float>
				<float builtin="y3" units="A">0.9292</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_2">
				<integer builtin="atomId">2</integer>
				<float builtin="x3" units="A">4.0333</float>
				<float builtin="y3" units="A">0.1042</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_3">
				<integer builtin="atomId">3</integer>
				<float builtin="x3" units="A">4.7418</float>
				<float builtin="y3" units="A">-0.3096</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_4">
				<integer builtin="atomId">4</integer>
				<float builtin="x3" units="A">5.4589</float>
				<float builtin="y3" units="A">0.0970</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_5">
				<integer builtin="atomId">5</integer>
				<float builtin="x3" units="A">5.4631</float>
				<float builtin="y3" units="A">0.9220</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_6">
				<integer builtin="atomId">6</integer>
				<float builtin="x3" units="A">4.7501</float>
				<float builtin="y3" units="A">1.3404</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_7">
				<integer builtin="atomId">7</integer>
				<float builtin="x3" units="A">3.3208</float>
				<float builtin="y3" units="A">1.3417</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_8">
				<integer builtin="atomId">8</integer>
				<float builtin="x3" units="A">3.3167</float>
				<float builtin="y3" units="A">-0.3042</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_9">
				<integer builtin="atomId">9</integer>
				<float builtin="x3" units="A">6.1750</float>
				<float builtin="y3" units="A">1.3417</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">C</string>
			</atom>
			<atom id="p_a_10">
				<integer builtin="atomId">10</integer>
				<float builtin="x3" units="A">6.1708</float>
				<float builtin="y3" units="A">2.1667</float>
				<float builtin="z3" units="A">0.0000</float>
				<string builtin="elementType">O</string>
			</atom>
		</list>
		<list title="bonds">
			<bond id="p_b_1">
				<integer title="bondId">1</integer>
				<integer builtin="atomRef">4</integer>
				<integer builtin="atomRef">5</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_2">
				<integer title="bondId">2</integer>
				<integer builtin="atomRef">5</integer>
				<integer builtin="atomRef">6</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_3">
				<integer title="bondId">3</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">2</integer>
				<integer builtin="order" convention="MDL">2</integer>
			</bond>
			<bond id="p_b_4">
				<integer title="bondId">4</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">7</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_5">
				<integer title="bondId">5</integer>
				<integer builtin="atomRef">1</integer>
				<integer builtin="atomRef">6</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_6">
				<integer title="bondId">6</integer>
				<integer builtin="atomRef">2</integer>
				<integer builtin="atomRef">8</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_7">
				<integer title="bondId">7</integer>
				<integer builtin="atomRef">2</integer>
				<integer builtin="atomRef">3</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_8">
				<integer title="bondId">8</integer>
				<integer builtin="atomRef">5</integer>
				<integer builtin="atomRef">9</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_9">
				<integer title="bondId">9</integer>
				<integer builtin="atomRef">3</integer>
				<integer builtin="atomRef">4</integer>
				<integer builtin="order" convention="MDL">1</integer>
			</bond>
			<bond id="p_b_10">
				<integer title="bondId">10</integer>
				<integer builtin="atomRef">9</integer>
				<integer builtin="atomRef">10</integer>
				<integer builtin="order" convention="MDL">2</integer>
			</bond>
		</list>
	</molecule>
</cml>
</document>