API for the CML and related classes

This directory holds all the APIs for the CML and related classes. There are seven packages and each has been processed with javadoc, so the details are found under that architecture. (The java.* class documentation may also be included here for compatability of links). javadoc doesn't add an overall description for each package so those are contained in the descriptions below:

• additional general documentation
• CML documentation

  Primarily a set of classes which map onto the elements defined in the CML and TecML DTDs (about 20). There are ancillary classes for converting chemical/MIME types to CML objects and a few other classes.
  package pmr.cml

• euclid documentation

  Discipline-independent mathematical and housekeeping routines, with particular emphasis on geometry, arrays and matrices..
  package pmr.euclid

• molecule documentation

  Useful support classes in molecular science (e.g. AminoAcid, SIUnit, etc.)
  package pmr.molecule

• sgml documentation

  Flexible tools for managing SGML-based applications, including HTML. Classes include GI, DTD, SGMLNode (== element), SGMLAttributeList, etc.). The DTDs can be nested to allow hierarchical applications and DTDs can also be loaded dynamically.
  package pmr.sgml

• simplegraph documentation

  Simple graphics routines to overcome some of the limitations of JDK1.0. I expect some of these to be phased out. Includes a GKS-like tool for 2-dimensional scaling.
  package pmr.simplegraph

• stat documentation

  Statistics routines; at present Uni-, Bi- and Multi-variate. Not comprehensive yet
  package pmr.stat

• util documentation

  A set of miscellaneous utilities.
  package pmr.util

Here is a list of the packages