API for the CML classes

This package, supports the Chemical Markup Language DTD and holds CML document instances in object form.

Every ELEMENT in the CML DTD has an associated class, thus MOL is catered for by the MOLNode.java class, and XLIST by XLISTNode.java.

TecML ELEMENTs as nodes in a tree

• ADMINNode Container for administrative information (ownership, authorship, etc)
• ARRAYNode A generic array with several TYPEs
• FIGURENode A diagram or other figure.
• NOTATIONNode Included information in another format (non-CML).
• TecMLNode Toplevl node for TecML object
• PERSONNode A person and contained information.
• RELATIONNode A relation between 2 or more objects
• SYMBOLNode A symbolic variable or expression (placeholder)
• TERMENTRYNode A glossary or dictionary entry
• XADDRNode A physical or e-mail address
• XHTMLNode A hypertext object
• XLISTNode A very general container
• XVARNode A scalar variable with several TYPEs

CML ELEMENTs as nodes in a tree

• ATOMSNode Container for ARRAYs of atomic properties.
• BIBNode Container for bibliographic information (e.g. citations)
• BONDSNode Container for ARRAYs of bond properties.
• CMLNode Toplevel node for a CML document
• CRYSTNode Crystallographics information (especially unit cell)
• FEATURENode Macromolecular features (i.e. annotations of sequence and structure).
• FORMULANode Molecular formula, connection table or otherwise
• MOLNode A molecule.
• SEQUENCENode A macromolecular sequence.
• SYMMETRYNode Molecular (not crystallographic) symmetry

Here are the javadoc entries to the classes:

• AllNames.html
• packages.html
• tree.html

Good luck!