NAME
EyeBalls
DESCRIPTION
This module inputs an Explorer Chemistry Pyramid and generates
various ball and stick molecular geometries. Single double and
triple bonds are supported, provided the incoming bond order
information is correct.
The optional colormap can be used to color the atoms and bonds.
If it is omitted, the values used are as follows:
ATOM NUMBER COLOR
Hydrogen 1 pale white
Carbon 6 pale green
Nitrogen 7 blue
Oxygen 8 red
Fluorine 9 green
Phosphorus 15 violet
Sulfur 16 yellow
Chlorine 17 green
Bromine 35 gray
INPUTS
Molecule -- Pyramid
(n-layer, optional-baseLat, n-D compression, n-compression type).
The source molecule.
Colormap -- Lattice (Opt.)
(1-D, 4-vector).
A colormap to color the atoms. The value from the colormap is
the "color" data variable from the chemistry pyramid. Most
chemistry reader modules fill this value with the atomic number
of the atom.
WIDGETS
Atom Radius -- Dial
Sphere radius normalized to Van der Waals radius.
Complexity -- Dial
The number of polygons for spheres and polytubes.
model -- Radio Box
Selected geometry of spacefills, polytubes, ball and sticks, and lines.
Bond Radius -- Dial
Polytube radius.
OUTPUTS
Output -- Geometry
Sphere, Cylinder, and Line geometry.
KNOWN PROBLEMS
SEE ALSO
EyeMopac, EyeG92, ReadPDB, Render