NAME

    EyeBalls

DESCRIPTION

      This module inputs an Explorer Chemistry Pyramid and generates
      various ball and stick molecular geometries. Single double and
      triple bonds are supported, provided the incoming bond order
      information is correct. 
        
      The optional colormap can be used to color the atoms and bonds.
      If it is omitted, the values used are as follows:
        
      ATOM           NUMBER    COLOR
      Hydrogen       1         pale white
      Carbon         6         pale green
      Nitrogen       7         blue
      Oxygen         8         red
      Fluorine       9         green
      Phosphorus     15        violet
      Sulfur         16        yellow
      Chlorine       17        green
      Bromine        35        gray

INPUTS

    Molecule -- Pyramid
       (n-layer, optional-baseLat, n-D compression, n-compression type).
       The source molecule.

    Colormap -- Lattice (Opt.)
       (1-D, 4-vector).
       A colormap to color the atoms. The  value  from  the colormap  is
       the  "color"  data variable  from  the  chemistry  pyramid. Most
       chemistry reader modules fill this value with the atomic number 
       of the atom.

WIDGETS

    Atom Radius -- Dial
       Sphere radius normalized to Van der Waals radius.

    Complexity -- Dial
       The number of polygons for spheres and polytubes.

    model -- Radio Box
       Selected geometry of spacefills, polytubes, ball and sticks, and lines.

    Bond Radius -- Dial
       Polytube radius.

OUTPUTS

      Output -- Geometry
         Sphere, Cylinder, and Line geometry. 

KNOWN PROBLEMS


SEE ALSO

    
   EyeMopac, EyeG92, ReadPDB,  Render